Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 204,483 A→G E379G (GAG→GGG)  lpxB → lipid A disaccharide synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913204,4830AG100.0% 347.0 / NA 95E379G (GAG→GGG) lpxBlipid A disaccharide synthase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (47/48);  total (47/48)

GCAAAAACTGGCTGCGGCGCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTGCCGGG  >  NC_000913/204349‑204618
                                                                                                                                      |                                                                                                                                       
gCAAAAACTGGCTGCGGCGCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAg                                                                                                                                    >  1:853670/1‑140 (MQ=255)
  aaaaaCTGGCTGCGGCGCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATTCCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGca                                                                                                                                  <  1:745376/140‑1 (MQ=255)
  aaaaaCTGGCTGCGGCGCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGca                                                                                                                                  <  1:928979/140‑1 (MQ=255)
  aaaaaCTGGCTGCGGCGCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGca                                                                                                                                  >  2:1502239/1‑140 (MQ=255)
          gCTGCGGCGCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATc                                                                                                                          <  2:512807/140‑1 (MQ=255)
            tGCGGCGCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGa                                                                                                                        <  2:750313/140‑1 (MQ=255)
             gcggcgCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGaa                                                                                                                       <  2:2297771/140‑1 (MQ=255)
               ggcgCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAAtt                                                                                                                     >  1:633480/1‑140 (MQ=255)
                gcgcTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAAttt                                                                                                                    >  1:2023952/1‑140 (MQ=255)
                  gcTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGt                                                                                                                  <  1:2015203/140‑1 (MQ=255)
                     gTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTa                                                                                                               <  2:853670/140‑1 (MQ=255)
                     gTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTa                                                                                                               <  1:69537/140‑1 (MQ=255)
                          cGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGc                                                                                                          <  1:228943/140‑1 (MQ=255)
                           gCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGca                                                                                                         >  1:2192561/1‑140 (MQ=255)
                            cTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGcac                                                                                                        >  2:74159/1‑140 (MQ=255)
                              gTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCacac                                                                                                      >  1:2409723/1‑140 (MQ=255)
                              gTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCacac                                                                                                      >  2:1096921/1‑140 (MQ=255)
                                tGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCacac                                                                                                      <  1:680002/138‑1 (MQ=255)
                                tGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCacac                                                                                                      >  2:680002/1‑138 (MQ=255)
                                tGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGc                                                                                                    >  2:1320371/1‑140 (MQ=255)
                                tGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGc                                                                                                    >  1:1969786/1‑140 (MQ=255)
                                tGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGc                                                                                                    >  2:695575/1‑140 (MQ=255)
                                tGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGc                                                                                                    >  1:88208/1‑140 (MQ=255)
                                  gCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAg                                                                                                  <  1:1320371/140‑1 (MQ=255)
                                     aaCGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTg                                                                                               >  1:1043442/1‑140 (MQ=255)
                                         ggAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTg                                                                                           <  2:1043442/140‑1 (MQ=255)
                                         ggAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTg                                                                                           <  1:1502239/140‑1 (MQ=255)
                                         ggAAAACCAGCCACGCGATGCACAATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTg                                                                                           <  1:359289/140‑1 (MQ=255)
                                           aaaaCCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAAAGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCg                                                                                         <  1:74159/140‑1 (MQ=255)
                                              aCCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGgt                                                                                      <  1:1096921/140‑1 (MQ=255)
                                              aCCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGgt                                                                                      <  2:633480/140‑1 (MQ=255)
                                                  gCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTgg                                                                                  >  2:1329492/1‑140 (MQ=255)
                                                  gCCACGCGATGCACGACACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTgg                                                                                  >  2:633753/1‑140 (MQ=255)
                                                    cACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGAt                                                                                <  2:1290200/140‑1 (MQ=255)
                                                         gATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGt                                                                           <  1:721906/140‑1 (MQ=255)
                                                               cGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGAcg                                                                     <  2:88208/140‑1 (MQ=255)
                                                                    ccTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGc                                                                <  1:2346066/140‑1 (MQ=255)
                                                                     cTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGcc                                                               >  2:629642/1‑140 (MQ=255)
                                                                     cTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGcc                                                               >  2:1985977/1‑140 (MQ=255)
                                                                     cTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGcc                                                               >  2:2197795/1‑140 (MQ=255)
                                                                     cTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGcc                                                               >  1:2377106/1‑140 (MQ=255)
                                                                     cTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGcc                                                               >  1:1517451/1‑140 (MQ=255)
                                                                       tCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGt                                                             >  1:791967/1‑140 (MQ=255)
                                                                       tCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGt                                                             >  1:1498421/1‑140 (MQ=255)
                                                                       tCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGt                                                             >  1:634985/1‑140 (MQ=255)
                                                                       tCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGt                                                             >  2:1236900/1‑140 (MQ=255)
                                                                       tCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGt                                                             >  2:586711/1‑140 (MQ=255)
                                                                         cGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTa                                                           >  2:1835956/1‑140 (MQ=255)
                                                                          gTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGAcgcg                                                                   >  1:1775576/1‑131 (MQ=255)
                                                                          gTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGAcgcg                                                                   <  2:1775576/131‑1 (MQ=255)
                                                                          gTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAg                                                          >  1:854976/1‑140 (MQ=255)
                                                                            gAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGtt                                                        >  1:1930678/1‑140 (MQ=255)
                                                                              aCTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTgg                                                      >  1:971830/1‑140 (MQ=255)
                                                                                tGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGgcg                                                    <  1:1079112/140‑1 (MQ=255)
                                                                                tGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGgcg                                                    <  1:1236900/140‑1 (MQ=255)
                                                                                tGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGgcg                                                    <  2:2409723/140‑1 (MQ=255)
                                                                                  cATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGcgcg                                                  >  1:501564/1‑140 (MQ=255)
                                                                                  cATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGcgcg                                                  <  1:1835956/140‑1 (MQ=255)
                                                                                   aTCAGCAGATCTGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCgg                                                 >  2:1312568/1‑140 (MQ=255)
                                                                                         agATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCa                                           >  2:101016/1‑140 (MQ=255)
                                                                                          gATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCAc                                          >  2:2340138/1‑140 (MQ=255)
                                                                                            tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCAc                                          >  2:1263739/1‑138 (MQ=255)
                                                                                            tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCAc                                          <  1:1263739/138‑1 (MQ=255)
                                                                                            tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCg                                        <  1:1312568/140‑1 (MQ=255)
                                                                                            tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCg                                        >  1:2309420/1‑140 (MQ=255)
                                                                                            tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCg                                        <  2:2377106/140‑1 (MQ=255)
                                                                                            tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCg                                        >  1:1484501/1‑140 (MQ=255)
                                                                                            tCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCg                                        <  1:633753/140‑1 (MQ=255)
                                                                                             ccGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCAc                                          >  1:470882/1‑137 (MQ=255)
                                                                                             ccGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCAc                                          <  2:470882/137‑1 (MQ=255)
                                                                                             ccGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGc                                       <  1:651407/140‑1 (MQ=255)
                                                                                                  gCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCgg                                  >  1:1927889/1‑140 (MQ=255)
                                                                                                  gCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCgg                                  <  2:2309420/140‑1 (MQ=255)
                                                                                                  gCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCgg                                  >  2:725488/1‑140 (MQ=255)
                                                                                                  gCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCgg                                  <  2:1930678/140‑1 (MQ=255)
                                                                                                  gCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCgg                                  <  2:1484501/140‑1 (MQ=255)
                                                                                                   cAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGt                                 <  2:2192561/140‑1 (MQ=255)
                                                                                                   cAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGt                                 <  2:791967/140‑1 (MQ=255)
                                                                                                   cAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGt                                 <  2:1498421/140‑1 (MQ=255)
                                                                                                   cAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGt                                 <  2:1517451/140‑1 (MQ=255)
                                                                                                   cAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGt                                 <  1:1526105/140‑1 (MQ=255)
                                                                                                    aaTGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTg                                <  1:629642/140‑1 (MQ=255)
                                                                                                    aaTGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTg                                <  2:1969786/140‑1 (MQ=255)
                                                                                                     aTGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCg                                        >  1:1677095/1‑131 (MQ=255)
                                                                                                     aTGCCGATGAGCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCg                                        <  2:1677095/131‑1 (MQ=255)
                                                                                                               gCAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGAccc                     >  1:1741441/1‑140 (MQ=255)
                                                                                                                cAGGCGGCACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCg                    >  2:52149/1‑140 (MQ=255)
                                                                                                                   gcggcACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGgcg                 <  1:101016/140‑1 (MQ=255)
                                                                                                                   gcggcACAAGCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGgcg                 <  2:895773/140‑1 (MQ=255)
                                                                                                                            gCCGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGAtt        >  1:632385/1‑140 (MQ=255)
                                                                                                                             ccGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTg       <  2:1741441/140‑1 (MQ=255)
                                                                                                                             ccGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTg       >  1:1276264/1‑140 (MQ=255)
                                                                                                                              cGTTCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTGc      <  1:2340138/140‑1 (MQ=255)
                                                                                                                                ttCTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTGCCg    >  1:304480/1‑140 (MQ=255)
                                                                                                                                  cTGGGGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTGCCggg  <  2:632385/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
GCAAAAACTGGCTGCGGCGCTGTTACCGCTGTTGGCGAACGGGAAAACCAGCCACGCGATGCACGATACCTTCCGTGAACTGCATCAGCAGATCCGCTGCAATGCCGATGAGCAGGCGGCACAAGCCGTTCTGGAGTTAGCACAATGATCGAATTTGTTTATCCGCACACGCAGCTGGTTGCGGGTGTGGATGAAGTCGGACGCGGGCCGTTAGTTGGCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTGCCGGG  >  NC_000913/204349‑204618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A