Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,579,553 A→G K3K (AAA→AAG)  yneP → protein YneP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,579,5530AG98.9% 336.5 / ‑4.6 94K3K (AAA→AAG) ynePprotein YneP
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (47/46);  total (48/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01

TAACAATATGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTT  >  NC_000913/1579418‑1579689
                                                                                                                                       |                                                                                                                                        
tAACAATATGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCAcc                                                                                                                                      <  2:249521/140‑1 (MQ=255)
 aaCAATATGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCAccc                                                                                                                                     >  2:53635/1‑140 (MQ=255)
      tatGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAg                                                                                                                                >  1:633544/1‑140 (MQ=255)
        tGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGa                                                                                                                              >  1:1027760/1‑140 (MQ=255)
        tGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGa                                                                                                                              >  2:1287362/1‑140 (MQ=255)
           aaTATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAAtt                                                                                                                           >  1:1408410/1‑140 (MQ=255)
           aaTATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAAtt                                                                                                                           <  2:1290698/140‑1 (MQ=255)
              ataAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTAt                                                                                                                        >  2:1301599/1‑140 (MQ=255)
                aaaGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGt                                                                                                                      >  1:380945/1‑140 (MQ=255)
                  aGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCg                                                                                                                    <  1:373372/140‑1 (MQ=255)
                   ggAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCgg                                                                                                                   <  1:295602/140‑1 (MQ=255)
                   ggAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCgg                                                                                                                   <  2:714052/140‑1 (MQ=255)
                     aaTATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGt                                                                                                                 <  1:1186798/140‑1 (MQ=255)
                      atatTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTg                                                                                                                <  1:1287362/140‑1 (MQ=255)
                      atatTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTg                                                                                                                <  1:708800/140‑1 (MQ=255)
                      atatTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTg                                                                                                                <  2:1165959/140‑1 (MQ=255)
                        atTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGcc                                                                                                              <  1:1301599/140‑1 (MQ=255)
                        atTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGcc                                                                                                              <  2:1408410/140‑1 (MQ=255)
                            cATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGt                                                                                                          >  2:634100/1‑140 (MQ=255)
                              ttttCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTa                                                                                                        <  1:202401/140‑1 (MQ=255)
                                 tCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAgg                                                                                                     <  2:483563/140‑1 (MQ=255)
                                 tCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAgg                                                                                                     <  1:1006113/140‑1 (MQ=255)
                                  cAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGt                                                                                                    <  2:1129153/140‑1 (MQ=255)
                                  cAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGt                                                                                                    <  2:633544/140‑1 (MQ=255)
                                   aGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACAAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTc                                                                                                   >  2:1351465/1‑140 (MQ=255)
                                       gttatggttatgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATaa                                                                                               >  2:86300/1‑140 (MQ=255)
                                       gttatggttatgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATaa                                                                                               >  1:1413309/1‑140 (MQ=255)
                                            ggttatgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAagg                                                                                          <  2:1223771/140‑1 (MQ=255)
                                               tatgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAaggagg                                                                                       >  2:812811/1‑140 (MQ=255)
                                                 tgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCt                                                                                     >  1:216688/1‑140 (MQ=255)
                                                 tgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCt                                                                                     <  2:1276330/140‑1 (MQ=255)
                                                 tgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCt                                                                                     >  2:1364356/1‑140 (MQ=255)
                                                 tgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCt                                                                                     >  1:559378/1‑140 (MQ=255)
                                                  gCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTa                                                                                    >  1:21282/1‑140 (MQ=255)
                                                      ttGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGaa                                                                                >  1:1046818/1‑140 (MQ=255)
                                                       tGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAAt                                                                               <  1:1362513/140‑1 (MQ=255)
                                                       tGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAAt                                                                               <  1:421293/140‑1 (MQ=255)
                                                       tGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAAt                                                                               <  2:1027760/140‑1 (MQ=255)
                                                       tGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAAt                                                                               >  2:421293/1‑140 (MQ=255)
                                                         aTAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATgg                                                                             <  1:53635/140‑1 (MQ=255)
                                                           aaTCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAg                                                                           >  2:647746/1‑140 (MQ=255)
                                                             tCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGtt                                                                         >  1:962951/1‑140 (MQ=255)
                                                              cAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTa                                                                        <  1:1351465/140‑1 (MQ=255)
                                                                aGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTaaa                                                                      >  2:426062/1‑140 (MQ=255)
                                                                aGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTaaa                                                                      >  1:1207197/1‑140 (MQ=255)
                                                                aGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTaaa                                                                      >  2:449404/1‑140 (MQ=255)
                                                                   atatTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAaga                                                                   <  1:812811/140‑1 (MQ=255)
                                                                       tGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGc                                                               >  2:997763/1‑140 (MQ=255)
                                                                        gCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCg                                                              <  1:426062/140‑1 (MQ=255)
                                                                          tAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGtt                                                            <  2:252656/140‑1 (MQ=255)
                                                                            aTGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGttat                                                          >  2:1140306/1‑140 (MQ=255)
                                                                              gCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGttatta                                                        >  1:1349235/1‑140 (MQ=255)
                                                                                  tGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTattaatta                                                    >  2:611652/1‑140 (MQ=255)
                                                                                   gATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAattat                                                   >  2:1120328/1‑140 (MQ=255)
                                                                                   gATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAattat                                                   >  2:412013/1‑140 (MQ=255)
                                                                                        aTACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTcc                                              <  1:634100/140‑1 (MQ=255)
                                                                                        aTACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTcc                                              >  1:1227887/1‑140 (MQ=255)
                                                                                         tACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTattaa                                                       >  2:609096/1‑130 (MQ=255)
                                                                                         tACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTattaa                                                       <  1:609096/130‑1 (MQ=255)
                                                                                         tACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCa                                             >  2:620598/1‑140 (MQ=255)
                                                                                         tACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCC‑TGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCAt                                            >  1:285328/1‑140 (MQ=255)
                                                                                              cGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGt                                        >  2:727399/1‑140 (MQ=255)
                                                                                              cGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGt                                        >  2:177674/1‑140 (MQ=255)
                                                                                              cGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGt                                        >  1:1038680/1‑140 (MQ=255)
                                                                                              cGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGt                                        >  1:1282896/1‑140 (MQ=255)
                                                                                                 aaGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGGCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGtttt                                     >  2:850112/1‑140 (MQ=255)
                                                                                                   gCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGc                                   <  2:811315/140‑1 (MQ=255)
                                                                                                   gCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGc                                   >  1:479186/1‑140 (MQ=255)
                                                                                                   gCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGc                                   <  2:962951/140‑1 (MQ=255)
                                                                                                    ccAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCa                                  >  2:1276525/1‑140 (MQ=255)
                                                                                                    ccAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCa                                  <  1:893608/140‑1 (MQ=255)
                                                                                                    ccAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCa                                  <  2:21282/140‑1 (MQ=255)
                                                                                                    ccAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCa                                  <  1:647746/140‑1 (MQ=255)
                                                                                                     cAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCaa                                 <  2:1207197/140‑1 (MQ=255)
                                                                                                     cAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCaa                                 <  1:86300/140‑1 (MQ=255)
                                                                                                     cAGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCAAAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCaa                                 <  2:1123391/140‑1 (MQ=255)
                                                                                                      aGGATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAAc                                >  1:649530/1‑140 (MQ=255)
                                                                                                        gATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACAt                              <  1:1276525/140‑1 (MQ=255)
                                                                                                        gATTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGCTATTAATTATTCTCCATTTGTTTTGCAACAt                              >  2:950945/1‑140 (MQ=255)
                                                                                                         aTTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCaa                                 >  1:168821/1‑136 (MQ=255)
                                                                                                         aTTTTCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCaa                                 <  2:168821/136‑1 (MQ=255)
                                                                                                             tCGCAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATa                         >  2:59840/1‑140 (MQ=255)
                                                                                                                cAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAAtg                      <  1:727399/140‑1 (MQ=255)
                                                                                                                cAAGGGAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAAtg                      <  2:216688/140‑1 (MQ=255)
                                                                                                                   gggAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTgg                   >  2:154080/1‑140 (MQ=255)
                                                                                                                     gAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTa                 <  1:1338738/140‑1 (MQ=255)
                                                                                                                     gAAGATGATGATGACGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTa                 <  1:1120328/140‑1 (MQ=255)
                                                                                                                          tgatgatgaCGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCg            <  1:1140306/140‑1 (MQ=255)
                                                                                                                          tgatgatgaCGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCg            <  2:380945/140‑1 (MQ=255)
                                                                                                                               atgaCGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTAct       >  1:133531/1‑140 (MQ=255)
                                                                                                                               atgaCGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTAct       >  2:106517/1‑140 (MQ=255)
                                                                                                                                   cGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTa                 >  2:373173/1‑126 (MQ=255)
                                                                                                                                   cGAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTa                 <  1:373173/126‑1 (MQ=255)
                                                                                                                                    gAAGCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGtt  <  1:997763/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TAACAATATGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTT  >  NC_000913/1579418‑1579689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A