Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,582,972	T→C	H239R (CAC→CGC)	ydeO ←	DNA‑binding transcriptional dual regulator YdeO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,582,972	0	T	C	100.0%	299.5 / NA	81	H239R (CAC→CGC)	ydeO	DNA‑binding transcriptional dual regulator YdeO
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/41); total (40/41)

TATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGTGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCTTCTACGC  >  NC_000913/1582836‑1583104

tatatCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGAc                                                                                                                                   <  1:1208105/140‑1 (MQ=255)

    tCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTTGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGTCCGTATTCATACCCGTGCGACTTTg                                                                                                                               >  1:1311767/1‑140 (MQ=255)

    tCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTg                                                                                                                               >  1:79216/1‑140 (MQ=255)

     cGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGa                                                                                                                              <  1:1186085/140‑1 (MQ=255)

     cGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGa                                                                                                                              <  2:747111/140‑1 (MQ=255)

     cGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGa                                                                                                                              <  2:15841/140‑1 (MQ=255)

     cGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGa                                                                                                                              <  1:126944/140‑1 (MQ=255)

        cTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACaa                                                                                                                           >  2:740160/1‑140 (MQ=255)

          aaaaaCAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACg                                                                                                                         >  2:1147568/1‑140 (MQ=255)

           aaaaCAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACgg                                                                                                                        >  2:97090/1‑140 (MQ=255)

           aaaaCAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACgg                                                                                                                        >  1:855010/1‑140 (MQ=255)

           aaaaCAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACgg                                                                                                                        <  2:517774/140‑1 (MQ=255)

            aaaCAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGt                                                                                                                       <  2:693067/140‑1 (MQ=255)

             aacaacGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTa                                                                                                                      <  1:165648/140‑1 (MQ=255)

             aacaacGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTa                                                                                                                      <  2:20713/140‑1 (MQ=255)

                  cgcgGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCt                                                                                                                 >  2:638226/1‑140 (MQ=255)

                  cgcgGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCt                                                                                                                 >  1:426450/1‑140 (MQ=255)

                       ggCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGaa                                                                                                            <  1:1180993/140‑1 (MQ=255)

                          aGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAAct                                                                                                         >  2:398897/1‑140 (MQ=255)

                          aGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAAct                                                                                                         <  1:903735/140‑1 (MQ=255)

                                 ggCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCg                                                                                                  >  2:122764/1‑140 (MQ=255)

                                   cTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACCGTACTCCTTAGAAACTCTCTTCGGa                                                                                                <  1:740160/140‑1 (MQ=255)

                                    tGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGAc                                                                                               <  2:1343455/140‑1 (MQ=255)

                                      ccccATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTg                                                                                             >  2:861377/1‑140 (MQ=255)

                                      ccccATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTg                                                                                             <  1:1059427/140‑1 (MQ=255)

                                      ccccATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTg                                                                                             >  1:703277/1‑140 (MQ=255)

                                            ttAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCg                                                                                       >  1:783205/1‑140 (MQ=255)

                                                     aCGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACTCGTGCGACTTTGACAACGGTACACCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTg                                                                              >  2:1218183/1‑140 (MQ=255)

                                                        cAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCgg                                                                           <  2:783205/140‑1 (MQ=255)

                                                        cAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCgg                                                                           <  1:861377/140‑1 (MQ=255)

                                                         aGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACTCGTGCGACTTTGACAACGGTACACCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGa                                                                          <  1:1218183/140‑1 (MQ=255)

                                                         aGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGa                                                                          <  2:155691/140‑1 (MQ=255)

                                                          gCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGaa                                                                         <  1:638226/140‑1 (MQ=255)

                                                           cGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAAc                                                                        >  2:131994/1‑140 (MQ=255)

                                                              gtgtgGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCa                                                                     >  1:1305236/1‑140 (MQ=255)

                                                                gtgGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCata                                                                   <  2:79216/140‑1 (MQ=255)

                                                                 tgGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCataa                                                                  <  2:1378888/140‑1 (MQ=255)

                                                                  ggTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCataaa                                                                 <  1:626235/140‑1 (MQ=255)

                                                                  ggTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCataaa                                                                 <  2:855010/140‑1 (MQ=255)

                                                                     tGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCataaataa                                                              >  1:544954/1‑140 (MQ=255)

                                                                     tGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCataaataa                                                              >  1:471023/1‑140 (MQ=255)

                                                                     tGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCataaataa                                                              >  1:904365/1‑140 (MQ=255)

                                                                       actactCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATaaataaaa                                                            >  2:26279/1‑140 (MQ=255)

                                                                           ctCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAg                                                        <  1:1244630/140‑1 (MQ=255)

                                                                                tAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTa                                                   <  2:116090/140‑1 (MQ=255)

                                                                                tAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTa                                                   <  1:131994/140‑1 (MQ=255)

                                                                                 aGCAAATAATCAAATAGCTAAAGCATTCTTCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCAAAATGTTTGCGGAACGCATAAATAAAATAAGATGTAc                                                  >  2:45541/1‑140 (MQ=255)

                                                                                  gCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACt                                                 >  2:719916/1‑140 (MQ=255)

                                                                                    aaaTAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTgg                                               <  2:426450/140‑1 (MQ=255)

                                                                                    aaaTAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTgg                                               <  1:937712/140‑1 (MQ=255)

                                                                                     aataatCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGc                                              >  2:833471/1‑140 (MQ=255)

                                                                                     aataatCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGc                                              >  1:385316/1‑140 (MQ=255)

                                                                                      ataatCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCa                                             <  1:719916/140‑1 (MQ=255)

                                                                                      ataatCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCa                                             <  1:1147568/140‑1 (MQ=255)

                                                                                      ataatCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCa                                             <  1:398897/140‑1 (MQ=255)

                                                                                          tCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAAc                                         >  1:429804/1‑140 (MQ=255)

                                                                                              aTAGCTAAAGCATTCATCGTGTTGTCCGTATTCATACCCGTGCCACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACcaca                                     <  2:1311767/140‑1 (MQ=255)

                                                                                                     aaGCATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCg                              >  1:753200/1‑140 (MQ=255)

                                                                                                      aGCATTCATCGTGTTGCCCGTATTCATACCAGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTgg                                               <  2:297228/122‑1 (MQ=255)

                                                                                                      aGCATTCATCGTGTTGCCCGTATTCATACCAGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTgg                                               >  1:297228/1‑122 (MQ=255)

                                                                                                        cATTCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCa                           <  1:833471/140‑1 (MQ=255)

                                                                                                          ttCATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAAt                         >  1:1000448/1‑140 (MQ=255)

                                                                                                            cATCGTGTTGCCCGTATTCATATCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAAttt                       >  2:295105/1‑140 (MQ=255)

                                                                                                            cATCGTGTTGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAAttt                       >  2:1210949/1‑140 (MQ=255)

                                                                                                                   ttGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGAc                <  2:1305236/140‑1 (MQ=255)

                                                                                                                   ttGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGAc                <  1:1330247/140‑1 (MQ=255)

                                                                                                                   ttGCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGAc                <  2:753200/140‑1 (MQ=255)

                                                                                                                     gCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTg              <  2:544954/140‑1 (MQ=255)

                                                                                                                     gCCCGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTg              >  2:666057/1‑140 (MQ=255)

                                                                                                                      cccGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGa             <  1:97090/140‑1 (MQ=255)

                                                                                                                       ccGTATTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGaa            >  1:1267803/1‑140 (MQ=255)

                                                                                                                           aTTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTg                  <  1:913808/130‑1 (MQ=255)

                                                                                                                           aTTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTg                  >  2:913808/1‑130 (MQ=255)

                                                                                                                           aTTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCtt        >  2:1252794/1‑140 (MQ=255)

                                                                                                                           aTTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCtt        >  2:378109/1‑140 (MQ=255)

                                                                                                                           aTTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCt         >  1:443433/1‑139 (MQ=255)

                                                                                                                           aTTCATACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCt         <  2:443433/139‑1 (MQ=255)

                                                                                                                                tACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCTTCTAcg   >  1:939423/1‑140 (MQ=255)

                                                                                                                                tACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCTTCTAcg   >  1:75423/1‑140 (MQ=255)

                                                                                                                                tACCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGCTCGGCAATTTTATTGACTGAACCTTCTAcg   >  2:428088/1‑140 (MQ=255)

                                                                                                                                 aCCCGTGCGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCTTCTAcgc  >  2:290782/1‑140 (MQ=255)

TATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGTGTGTGGTTGACTACTCGTTAGCAAATAATCAAATAGCTAAAGCATTCATCGTGTTGCCCGTATTCATACCCGTGTGACTTTGACAACGGTACTCCTTAGAAACTCTCTTCGGACTGTTGCCGAAATGTTTGCGGAACGCATAAATAAAATAAGATGTACTGGCATAACCACATTGTTCGGCAATTTTATTGACTGAACCTTCTACGC  >  NC_000913/1582836‑1583104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A