Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
191 |
83.5 |
2830284 |
99.3% |
2810472 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,675,608 |
(C)5→6 |
coding (753/1389 nt) |
pntB ← |
pyridine nucleotide transhydrogenase subunit beta |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,675,603 | 1 | . | C | 100.0%
| 189.0
/ NA
| 52 | A253G (GCT→GGT) | pntB | pyridine nucleotide transhydrogenase subunit beta |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (24/28); total (24/28) |
TCTGCGGTGATTTCGCGGTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAG‑‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCTGCACCACCGATG > NC_000913/1675471‑1675737
|
tctGCGGTGATTTCGCGGTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAG‑‑ccccccg < 2:703869/140‑3 (MQ=255)
tctGCGGTGATTTCGCGGTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAG‑‑ccccccg < 2:29410/140‑3 (MQ=255)
tctGCGGTGATTTCGCGGTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAG‑‑ccccccg < 1:606535/140‑3 (MQ=255)
tctGCGGTGATTTCGCGGTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAG‑‑ccccccg < 1:397560/140‑3 (MQ=255)
ggTGATTTCGCGGTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCgaagaa > 1:364724/1‑140 (MQ=255)
tGATTTCGCGGTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAAcc < 1:205542/140‑1 (MQ=255)
ggTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAgcgc < 2:34964/140‑1 (MQ=255)
tGCTTACCCACTTACGGATCACCGCCAGTAGATGAGCCGCCGGTGCCGAACCCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATTATGTAAGAAAGGATAGC‑CCCCCGAAGTACCGACCAGCGCAc < 2:998793/140‑1 (MQ=255)
gCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCAcc > 1:521039/1‑140 (MQ=255)
cTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAAcc > 2:318144/1‑127 (MQ=255)
cTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAAcc < 1:318144/127‑1 (MQ=255)
tCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCgg < 2:1131593/140‑1 (MQ=255)
tCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCgg < 2:663719/140‑1 (MQ=255)
tCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCgg < 1:820687/140‑1 (MQ=255)
tCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCCTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCgg < 2:974153/140‑1 (MQ=255)
cTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAAt > 1:1021266/1‑140 (MQ=255)
ccTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATcag < 1:1410639/140‑1 (MQ=255)
atcGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCg < 2:918330/140‑1 (MQ=255)
tcGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGt > 1:1154092/1‑140 (MQ=255)
tcGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGt > 2:1394523/1‑140 (MQ=255)
tcGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGt > 1:720351/1‑140 (MQ=255)
gCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGt > 2:1357859/1‑135 (MQ=255)
gCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGt < 1:1357859/135‑1 (MQ=255)
cAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCt < 1:413218/140‑1 (MQ=255)
tAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAg > 1:387669/1‑140 (MQ=255)
tGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCccgcagc < 2:877738/140‑1 (MQ=255)
ccaccCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGcagccgcagccg < 1:1262102/140‑1 (MQ=255)
gCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGc < 2:387669/140‑1 (MQ=255)
gCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGc < 2:198763/140‑1 (MQ=255)
aTAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCgg < 2:1154092/140‑1 (MQ=255)
aTAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGt > 1:1238287/1‑140 (MQ=255)
ggAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGc < 2:322350/140‑1 (MQ=255)
aCGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATc < 1:285741/140‑1 (MQ=255)
aCGGTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATc < 2:1021266/140‑1 (MQ=255)
ggTTCATCGCCTTACACATAATGTAAGAAAGGATAGCCCCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCg > 2:1195023/1‑140 (MQ=255)
ggTTCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGa > 1:1288246/1‑140 (MQ=255)
ttCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGaca > 2:850581/1‑140 (MQ=255)
tCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGacac < 2:1238287/140‑1 (MQ=255)
tCATCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGacac < 2:1384680/140‑1 (MQ=255)
aTCGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCTGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGAcacca > 1:663271/1‑140 (MQ=255)
cGCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGAcaccacc > 2:420078/1‑140 (MQ=255)
gCCTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGAcaccacca < 2:978709/140‑1 (MQ=255)
cTTACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACt < 2:514054/140‑1 (MQ=255)
tACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTgg < 2:521039/140‑1 (MQ=255)
tACACATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTgg < 1:420078/140‑1 (MQ=255)
acacATAATGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGc < 1:1309567/140‑1 (MQ=255)
aaTGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGAcaccacc < 2:298227/128‑1 (MQ=255)
aaTGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGAcaccacc > 1:298227/1‑128 (MQ=255)
aaTGTAAGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCt > 1:159476/1‑140 (MQ=255)
aaGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCat < 2:155225/131‑1 (MQ=255)
aaGAAAGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCat > 1:155225/1‑131 (MQ=255)
aaaGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCTGCaccacc > 1:1265517/1‑140 (MQ=255)
aGGATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCTGCACCACCGa > 2:1095618/1‑140 (MQ=255)
gATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGTAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCTGCACCACCGATg > 2:814746/1‑140 (MQ=255)
gATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCTGCACCACCGATg > 1:1300598/1‑140 (MQ=255)
gATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCTGCACCACCGATg > 2:714289/1‑140 (MQ=255)
gATAGC‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCTGCACCACCGATg > 2:1406197/1‑140 (MQ=255)
|
TCTGCGGTGATTTCGCGGTGCTCACCCACTTCCTGATCATCGCCAGTAGAAGAGCCGTCGGTGCCGAAACCACCCGCAATAACGCTGATAAAGGAACGGTTCATCGCCTTACACATAATGTAAGAAAGGATAG‑‑CCCCCGAAGAACCGACCAGCGCACCGGTCACAATCAGCAGGTCGTTGCTGAGCATAAAGCCCGCAGCCGCAGCCGCCCAGCCGGAGTACGAGTTCAGCATCGACACCACCACTGGCATATCTGCACCACCGATG > NC_000913/1675471‑1675737
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
