Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
260 |
73.5 |
2514320 |
99.3% |
2496719 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,677,388 |
A→G |
G172G (GGT→GGC) |
pntA ← |
pyridine nucleotide transhydrogenase subunit alpha |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,677,388 | 0 | A | G | 100.0%
| 194.0
/ NA
| 57 | G172G (GGT→GGC) | pntA | pyridine nucleotide transhydrogenase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (27/30); total (27/30) |
CTTTAAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCACCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGTGCG > NC_000913/1677252‑1677520
|
ctTTAAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCa < 2:1038624/140‑1 (MQ=255)
tCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCAt < 2:908365/140‑1 (MQ=255)
aGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCAc > 1:481415/1‑140 (MQ=255)
aGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCAc > 2:1128427/1‑140 (MQ=255)
cTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACtt > 2:1125801/1‑140 (MQ=255)
cGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACtttt < 2:1238912/140‑1 (MQ=255)
gAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTg < 1:1063758/140‑1 (MQ=255)
aTACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTccc > 1:591328/1‑140 (MQ=255)
aTACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTccc > 2:20596/1‑140 (MQ=255)
aCTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCgg < 2:591328/140‑1 (MQ=255)
tGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGc > 2:628324/1‑140 (MQ=255)
gAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCa < 2:481415/140‑1 (MQ=255)
aaCTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAg > 2:1131316/1‑140 (MQ=255)
aaCTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAg > 1:695246/1‑140 (MQ=255)
tGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAAt < 1:1169038/140‑1 (MQ=255)
gTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAAtt > 2:203340/1‑140 (MQ=255)
tCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTg < 1:1045904/140‑1 (MQ=255)
cTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGc > 2:308362/1‑140 (MQ=255)
ttCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGccc > 2:1167271/1‑140 (MQ=255)
ttCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGccc < 1:1095574/140‑1 (MQ=255)
gggcgggTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGTCAGACCGGCAACACCCGCGCCAATCTCCATCTCTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAaagaa < 2:558923/140‑1 (MQ=255)
gggcgggTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAaagaa < 1:1128427/140‑1 (MQ=255)
ggcgggTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGcc < 1:293222/129‑1 (MQ=255)
ggcgggTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGcc > 2:293222/1‑129 (MQ=255)
cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCAtgt > 1:1092168/1‑140 (MQ=255)
cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCAtgt > 1:757654/1‑140 (MQ=255)
cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCAC‑TTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAgc < 1:1178654/125‑1 (MQ=255)
cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCAC‑TTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAgc > 2:1178654/1‑125 (MQ=255)
cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAACCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCACCCAAATTCAtgt > 2:713940/1‑140 (MQ=255)
acgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCAtgtg < 2:695246/140‑1 (MQ=255)
cgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGc < 1:978809/140‑1 (MQ=255)
cgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGc < 1:1185212/140‑1 (MQ=255)
gcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGcc > 1:401719/1‑140 (MQ=255)
gcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGcc < 1:20596/140‑1 (MQ=255)
gcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAACCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCACCCAAATTCATGTGcc < 1:713940/140‑1 (MQ=255)
acaATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGc < 1:1125801/140‑1 (MQ=255)
acaATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGc > 2:754639/1‑140 (MQ=255)
tCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCAtgttc > 2:49650/1‑131 (MQ=255)
tCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGc < 1:49650/133‑1 (MQ=255)
aCTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGgcgc > 2:338215/1‑140 (MQ=255)
tttGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATa > 2:764976/1‑140 (MQ=255)
tttGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATa < 2:1092168/140‑1 (MQ=255)
tgctgcGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGTAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAAc > 2:729316/1‑140 (MQ=255)
cgcCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCg > 2:1019953/1‑140 (MQ=255)
gcCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGa > 1:458467/1‑140 (MQ=255)
aTGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGtt > 1:763475/1‑140 (MQ=255)
ggcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCa > 1:752724/1‑140 (MQ=255)
ggcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCa > 1:117137/1‑140 (MQ=255)
gcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGTAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCAt < 1:729316/140‑1 (MQ=255)
gcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCAt < 2:1039851/140‑1 (MQ=255)
gcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCAt < 1:1131316/140‑1 (MQ=255)
gcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCAt < 1:628324/140‑1 (MQ=255)
ccAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATc < 2:578224/140‑1 (MQ=255)
gACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAg < 1:132438/140‑1 (MQ=255)
gACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAg < 1:203340/140‑1 (MQ=255)
tGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATTGAGCTTa < 2:1132336/140‑1 (MQ=255)
cAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGt > 2:505669/1‑140 (MQ=255)
cagccGCGCCAATCTCCATCACTTGTGCCGGTGGCACTTTCCCTGCCTCAGTAATTTTCCCGGTAAAGAAGCGCCCAAATCCATGTGCCGCTTCAACAATGGCGCGATACCCGGCGATGTTCGCCATCGAGCTTAGTGCg < 2:267144/137‑1 (MQ=255)
cacCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGTGCg < 2:1023612/140‑1 (MQ=255)
cacCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGTGCg < 2:1555/140‑1 (MQ=255)
|
CTTTAAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCACCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGTGCG > NC_000913/1677252‑1677520
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A