Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,677,388 A→G G172G (GGT→GGC pntA ← pyridine nucleotide transhydrogenase subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,677,3880AG100.0% 194.0 / NA 57G172G (GGT→GGCpntApyridine nucleotide transhydrogenase subunit alpha
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (27/30);  total (27/30)

CTTTAAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCACCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGTGCG  >  NC_000913/1677252‑1677520
                                                                                                                                        |                                                                                                                                    
ctTTAAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCa                                                                                                                                   <  2:1038624/140‑1 (MQ=255)
        tCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCAt                                                                                                                           <  2:908365/140‑1 (MQ=255)
           aGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCAc                                                                                                                        >  1:481415/1‑140 (MQ=255)
           aGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCAc                                                                                                                        >  2:1128427/1‑140 (MQ=255)
             cTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACtt                                                                                                                      >  2:1125801/1‑140 (MQ=255)
               cGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACtttt                                                                                                                    <  2:1238912/140‑1 (MQ=255)
                gAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTg                                                                                                                   <  1:1063758/140‑1 (MQ=255)
                                aTACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTccc                                                                                                   >  1:591328/1‑140 (MQ=255)
                                aTACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTccc                                                                                                   >  2:20596/1‑140 (MQ=255)
                                  aCTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCgg                                                                                                 <  2:591328/140‑1 (MQ=255)
                                      tGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGc                                                                                             >  2:628324/1‑140 (MQ=255)
                                       gAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCa                                                                                            <  2:481415/140‑1 (MQ=255)
                                        aaCTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAg                                                                                           >  2:1131316/1‑140 (MQ=255)
                                        aaCTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAg                                                                                           >  1:695246/1‑140 (MQ=255)
                                            tGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAAt                                                                                       <  1:1169038/140‑1 (MQ=255)
                                             gTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAAtt                                                                                      >  2:203340/1‑140 (MQ=255)
                                               tCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTg                                                                                    <  1:1045904/140‑1 (MQ=255)
                                                cTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGc                                                                                   >  2:308362/1‑140 (MQ=255)
                                                  ttCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGccc                                                                                 >  2:1167271/1‑140 (MQ=255)
                                                  ttCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGccc                                                                                 <  1:1095574/140‑1 (MQ=255)
                                                           gggcgggTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGTCAGACCGGCAACACCCGCGCCAATCTCCATCTCTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAaagaa                                                                        <  2:558923/140‑1 (MQ=255)
                                                           gggcgggTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAaagaa                                                                        <  1:1128427/140‑1 (MQ=255)
                                                            ggcgggTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGcc                                                                                  <  1:293222/129‑1 (MQ=255)
                                                            ggcgggTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGcc                                                                                  >  2:293222/1‑129 (MQ=255)
                                                                           cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCAtgt                                                        >  1:1092168/1‑140 (MQ=255)
                                                                           cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCAtgt                                                        >  1:757654/1‑140 (MQ=255)
                                                                           cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAgc                                                                      <  1:1178654/125‑1 (MQ=255)
                                                                           cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAgc                                                                      >  2:1178654/1‑125 (MQ=255)
                                                                           cacgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAACCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCACCCAAATTCAtgt                                                        >  2:713940/1‑140 (MQ=255)
                                                                            acgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCAtgtg                                                       <  2:695246/140‑1 (MQ=255)
                                                                             cgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGc                                                      <  1:978809/140‑1 (MQ=255)
                                                                             cgcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGc                                                      <  1:1185212/140‑1 (MQ=255)
                                                                              gcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGcc                                                     >  1:401719/1‑140 (MQ=255)
                                                                              gcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGcc                                                     <  1:20596/140‑1 (MQ=255)
                                                                              gcacAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAACCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCACCCAAATTCATGTGcc                                                     <  1:713940/140‑1 (MQ=255)
                                                                                acaATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGc                                                   <  1:1125801/140‑1 (MQ=255)
                                                                                acaATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGc                                                   >  2:754639/1‑140 (MQ=255)
                                                                                    tCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCAtgttc                                                      >  2:49650/1‑131 (MQ=255)
                                                                                    tCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGc                                                      <  1:49650/133‑1 (MQ=255)
                                                                                              aCTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGgcgc                                     >  2:338215/1‑140 (MQ=255)
                                                                                                  tttGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATa                                 >  2:764976/1‑140 (MQ=255)
                                                                                                  tttGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATa                                 <  2:1092168/140‑1 (MQ=255)
                                                                                                    tgctgcGCCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGTAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAAc                               >  2:729316/1‑140 (MQ=255)
                                                                                                         cgcCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCg                          >  2:1019953/1‑140 (MQ=255)
                                                                                                          gcCAATGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGa                         >  1:458467/1‑140 (MQ=255)
                                                                                                              aTGGCGGCCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGtt                     >  1:763475/1‑140 (MQ=255)
                                                                                                                   ggcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCa                >  1:752724/1‑140 (MQ=255)
                                                                                                                   ggcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCa                >  1:117137/1‑140 (MQ=255)
                                                                                                                    gcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGTAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCAt               <  1:729316/140‑1 (MQ=255)
                                                                                                                    gcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCAt               <  2:1039851/140‑1 (MQ=255)
                                                                                                                    gcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCAt               <  1:1131316/140‑1 (MQ=255)
                                                                                                                    gcCAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCAt               <  1:628324/140‑1 (MQ=255)
                                                                                                                     ccAGACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATc              <  2:578224/140‑1 (MQ=255)
                                                                                                                        gACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAg           <  1:132438/140‑1 (MQ=255)
                                                                                                                        gACCTGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAg           <  1:203340/140‑1 (MQ=255)
                                                                                                                            tGCAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATTGAGCTTa       <  2:1132336/140‑1 (MQ=255)
                                                                                                                              cAACACCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGt     >  2:505669/1‑140 (MQ=255)
                                                                                                                                 cagccGCGCCAATCTCCATCACTTGTGCCGGTGGCACTTTCCCTGCCTCAGTAATTTTCCCGGTAAAGAAGCGCCCAAATCCATGTGCCGCTTCAACAATGGCGCGATACCCGGCGATGTTCGCCATCGAGCTTAGTGCg  <  2:267144/137‑1 (MQ=255)
                                                                                                                                 cacCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGTGCg  <  2:1023612/140‑1 (MQ=255)
                                                                                                                                 cacCCGCGCCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGTGCg  <  2:1555/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
CTTTAAAATCCAGCTCGAGGAATTCCGCGCCCATACTTTGAACTTGTTCTTTCACTTCCGGGCGGGTGTCGAATGCACGCACAATCGCGCCGAGACTGTTTGCTGCGCCAATGGCGGCCAGACCTGCAACACCCGCACCAATCACCATCACTTTTGCCGGTGGCACTTTCCCGGCCGCAGTAATTTGCCCGGTAAAGAAGCGCCCAAATTCATGTGCCGCTTCAACAATGGCGCGATAACCGGCGATGTTCGCCATCGAGCTTAGTGCG  >  NC_000913/1677252‑1677520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

N/A