Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,692,183	(C)_5→6	coding (669/1266 nt)	uidC ←	outer membrane porin family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,692,178	1	.	C	100.0%	290.3 / NA	80	A225G (GCA→GGA)	uidC	outer membrane porin family protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (38/42); total (38/42)

CTGGCTGGTATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATG‑‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAATCAGTC  >  NC_000913/1692039‑1692309

ctggctggTATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATg                                                                                                                                       <  1:278140/140‑1 (MQ=255)

ctggctggTATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATg                                                                                                                                       <  1:858385/140‑1 (MQ=255)

ctggctggTATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATg                                                                                                                                       <  2:187943/140‑1 (MQ=255)

ctggctggTATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATg                                                                                                                                       <  2:147578/140‑1 (MQ=255)

  ggctggTATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATG‑‑cc                                                                                                                                   <  1:582680/140‑1 (MQ=255)

  ggctggTATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATG‑‑cc                                                                                                                                   <  2:1402714/140‑1 (MQ=255)

        tATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATG‑‑ccccccag                                                                                                                             >  2:298968/1‑137 (MQ=255)

             cGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAAt                                                                                                                         >  1:794985/1‑140 (MQ=255)

             cGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAAt                                                                                                                         >  1:1320879/1‑140 (MQ=255)

                cTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGc                                                                                                                      <  2:227423/140‑1 (MQ=255)

                 ttAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCg                                                                                                                     <  2:418311/140‑1 (MQ=255)

                  ttaaCCTTCGAGCTGCGCGTAAAAGGCGAGATTCTACCTTTTCAACCTATAATTCGGGTCGAGCGGTATGCTTTTCTCGATAATACTTTGTATCTGATTCGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCgt                                                                                                                    <  2:975133/138‑2 (MQ=255)

                  tAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    >  2:1359494/1‑140 (MQ=255)

                  tAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    >  2:453751/1‑140 (MQ=255)

                  tAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    <  2:689886/140‑1 (MQ=255)

                  tAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    <  1:298968/140‑1 (MQ=255)

                  tAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    <  1:428245/140‑1 (MQ=255)

                    aaCCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    <  1:1340239/138‑1 (MQ=255)

                    aaCCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACt                                                                                                                  >  1:354076/1‑140 (MQ=255)

                    aaCCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTAGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    >  2:1340239/1‑138 (MQ=255)

                           gAGCTGCGCGTAAAAGCCGAGCAGCTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTatca                                                                                                           <  1:1115601/140‑1 (MQ=255)

                                 cgcgTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    >  2:989958/1‑125 (MQ=255)

                                 cgcgTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGa                                                                                                                    <  1:989958/125‑1 (MQ=255)

                                       aaaGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTg                                                                                               >  1:1335445/1‑140 (MQ=255)

                                       aaaGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTg                                                                                               <  1:1256481/140‑1 (MQ=255)

                                           ccGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTggcgg                                                                                           >  2:1166439/1‑140 (MQ=255)

                                           ccGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTggcgg                                                                                           >  1:824322/1‑140 (MQ=255)

                                           ccGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTggcgg                                                                                           <  2:708186/140‑1 (MQ=255)

                                             gAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGCCCCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTggcggc                                                                                          >  2:723484/1‑140 (MQ=255)

                                             gAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTggc                                                                                             >  2:1166060/1‑136 (MQ=255)

                                             gAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTggc                                                                                             <  1:1166060/136‑1 (MQ=255)

                                             gAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCt                                                                                         <  2:436823/140‑1 (MQ=255)

                                             gAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCt                                                                                         <  2:354076/140‑1 (MQ=255)

                                              aGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTa                                                                                        >  2:740797/1‑140 (MQ=255)

                                              aGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTa                                                                                        >  1:86642/1‑140 (MQ=255)

                                                    tCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAg                                                                                  >  2:316429/1‑140 (MQ=255)

                                                       ccTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAAc                                                                               <  2:673303/140‑1 (MQ=255)

                                                            cAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTgcg                                                                          <  2:917618/140‑1 (MQ=255)

                                                            cAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTgcg                                                                          <  2:967090/140‑1 (MQ=255)

                                                            cAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTgcg                                                                          <  1:453751/140‑1 (MQ=255)

                                                             aaCGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTgcgc                                                                         >  1:429512/1‑140 (MQ=255)

                                                              aCGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGcgcg                                                                        >  2:198077/1‑140 (MQ=255)

                                                               cGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGa                                                                       >  2:878578/1‑140 (MQ=255)

                                                                gTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGAt                                                                      >  1:100167/1‑140 (MQ=255)

                                                                 tataATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATg                                                                     >  2:513826/1‑140 (MQ=255)

                                                                  ataATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAGCATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGt                                                                    <  1:513826/140‑1 (MQ=255)

                                                                           gTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTAt                                                           >  1:612987/1‑140 (MQ=255)

                                                                           gTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTAt                                                           >  2:141025/1‑140 (MQ=255)

                                                                           gTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATACCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTAt                                                           >  2:706042/1‑140 (MQ=255)

                                                                               aGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTc                                                       >  1:26852/1‑140 (MQ=255)

                                                                                     aTGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAATATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCt                                                 <  1:46332/140‑1 (MQ=255)

                                                                                     aTGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCt                                                 <  2:769912/140‑1 (MQ=255)

                                                                                       gCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTgg                                               <  2:1076264/140‑1 (MQ=255)

                                                                                       gCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTgg                                               <  1:316429/140‑1 (MQ=255)

                                                                                       gCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTgg                                               <  1:1359494/140‑1 (MQ=255)

                                                                                       gCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTgg                                               <  2:824322/140‑1 (MQ=255)

                                                                                         ttttCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCt                                             <  1:1166439/140‑1 (MQ=255)

                                                                                           ttCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGc                                              <  1:643931/137‑1 (MQ=255)

                                                                                           ttCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGc                                              >  2:643931/1‑137 (MQ=255)

                                                                                            tctcGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGtt                                          >  2:381077/1‑140 (MQ=255)

                                                                                             ctcGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTta                                         <  2:612987/140‑1 (MQ=255)

                                                                                              tcGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTgg                                               >  2:517201/1‑133 (MQ=255)

                                                                                              tcGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTtat                                        >  1:241535/1‑140 (MQ=255)

                                                                                              tcGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGCCTgg                                               <  1:517201/133‑1 (MQ=255)

                                                                                                   aaTACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACAcc                                   <  2:429512/140‑1 (MQ=255)

                                                                                                            tATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTtcatca                          <  2:26852/140‑1 (MQ=255)

                                                                                                            tATCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTtcatca                          <  2:100167/140‑1 (MQ=255)

                                                                                                             aTCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCAc                         >  1:137309/1‑140 (MQ=255)

                                                                                                              tCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACg                        <  1:336579/140‑1 (MQ=255)

                                                                                                              tCTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACg                        >  1:1413957/1‑140 (MQ=255)

                                                                                                               cTGATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGa                       <  2:493936/140‑1 (MQ=255)

                                                                                                                 gATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAAt                     >  2:477794/1‑140 (MQ=255)

                                                                                                                 gATTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAAt                     >  2:705426/1‑140 (MQ=255)

                                                                                                                  aTTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTtc                              >  2:228031/1‑130 (MQ=255)

                                                                                                                  aTTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTtc                              <  1:228031/130‑1 (MQ=255)

                                                                                                                  aTTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATa                    >  2:558428/1‑140 (MQ=255)

                                                                                                                  aTTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATa                    >  2:528601/1‑140 (MQ=255)

                                                                                                                  aTTGGAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATa                    >  1:1354543/1‑140 (MQ=255)

                                                                                                                     ggAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCg                 <  2:1335445/140‑1 (MQ=255)

                                                                                                                     ggAAACATCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCg                 <  2:1395103/140‑1 (MQ=255)

                                                                                                                            tCTTTCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGttgttg          >  1:174589/1‑140 (MQ=255)

                                                                                                                               ttCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTGTCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAAt       <  2:1320879/140‑1 (MQ=255)

                                                                                                                               ttCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAAt       <  2:137309/140‑1 (MQ=255)

                                                                                                                               ttCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAAt       <  2:1408954/140‑1 (MQ=255)

                                                                                                                               ttCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAAt       <  1:528601/140‑1 (MQ=255)

                                                                                                                               ttCTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAAt       <  1:987480/140‑1 (MQ=255)

                                                                                                                                 cTGTACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAATCa     >  2:934144/1‑140 (MQ=255)

                                                                                                                                    tACCGATGC‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAATCAGTc  <  1:477794/140‑1 (MQ=255)

CTGGCTGGTATTACGACTTAAACCTTCGAGCTGCGCGTAAAAGCCGAGCAACTCCCCTTTCAACGTATAATTCGGGTCGAGCGGTATGCTTTTCTCGAGAATACTTTGTATCTGATTGGAAACATCTTTCTGTACCGATG‑‑CCCCCAGAGAATAGCGACTGGTATCATCATGCCAACTGGCGGCTAAAAAAGAACGTGCGCGATGTTTATCGTATTTTCCCGTCTGGCTGTTATACACCCCTTCATCACGAATACCGGTTGTTGAATCAGTC  >  NC_000913/1692039‑1692309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A