Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,698,024 T→C N6S (AAC→AGC)  hdhA ← 7‑alpha‑hydroxysteroid dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,698,0240TC100.0% 297.2 / NA 84N6S (AAC→AGC) hdhA7‑alpha‑hydroxysteroid dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (42/42);  total (42/42)

AACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAAGAGAGGATTATTTCG  >  NC_000913/1697888‑1698159
                                                                                                                                        |                                                                                                                                       
aacaTGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGt                                                                                                                                      <  2:624951/140‑1 (MQ=255)
aacaTGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGt                                                                                                                                      <  1:1197126/140‑1 (MQ=255)
aacaTGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGt                                                                                                                                      <  1:11896/140‑1 (MQ=255)
     ggTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGaa                                                                                                                                 >  2:27595/1‑140 (MQ=255)
         aGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTaa                                                                                                                             >  2:1114630/1‑140 (MQ=255)
              cGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAAcaca                                                                                                                        >  1:1054611/1‑140 (MQ=255)
              cGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAAcaca                                                                                                                        >  2:273195/1‑140 (MQ=255)
                tCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATa                                                                                                                      >  1:404311/1‑140 (MQ=255)
                tCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATa                                                                                                                      >  1:7790/1‑140 (MQ=255)
                    cGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAAcc                                                                                                                  >  1:1069980/1‑140 (MQ=255)
                        aaTATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAAcctcct                                                                                                              <  1:288613/140‑1 (MQ=255)
                                  accaccACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCa                                                                                                    >  2:463920/1‑140 (MQ=255)
                                  accaccACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCa                                                                                                    >  2:546326/1‑140 (MQ=255)
                                  accaccACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCa                                                                                                    >  2:1172562/1‑140 (MQ=255)
                                  accaccACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCa                                                                                                    >  2:252263/1‑140 (MQ=255)
                                    caccacAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTTTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGt                                                                                                  <  2:105780/140‑1 (MQ=255)
                                     accacAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTa                                                                                                 >  2:1390256/1‑140 (MQ=255)
                                       cacaGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTaaa                                                                                               >  1:1110087/1‑140 (MQ=255)
                                            aTGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATaa                                                                                          <  1:118677/140‑1 (MQ=255)
                                            aTGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATaa                                                                                          <  2:1668/140‑1 (MQ=255)
                                            aTGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATaa                                                                                          >  1:15890/1‑140 (MQ=255)
                                                 ccAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGGACCCGCACCTGTGATGATTGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTACAGTAAAAATAAAAGGc                                                                                     >  2:1259060/1‑140 (MQ=255)
                                                 ccAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGc                                                                                     <  2:1110087/140‑1 (MQ=255)
                                                       gTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGcc                                                                               <  1:1259060/140‑1 (MQ=255)
                                                        tCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCt                                                                              >  2:967214/1‑140 (MQ=255)
                                                          gcgAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCtgt                                                                            <  1:1272440/140‑1 (MQ=255)
                                                                  aaTGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCcaca                                                                    <  1:252263/140‑1 (MQ=255)
                                                                       cgttttCTTTACCAATCCCTGCCCCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAACCCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACAttttt                                                               <  2:1069980/137‑1 (MQ=255)
                                                                         aTTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGcc                                                                       <  1:1319741/130‑1 (MQ=255)
                                                                         aTTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGcc                                                                       >  2:1319741/1‑130 (MQ=255)
                                                                         aTTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTa                                                             >  1:1082446/1‑140 (MQ=255)
                                                                         aTTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTa                                                             >  1:1377716/1‑140 (MQ=255)
                                                                           ttCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATc                                                           >  2:585614/1‑140 (MQ=255)
                                                                                  ccAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAAcc                                                    <  1:546326/140‑1 (MQ=255)
                                                                                      tACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGa                                                >  2:1290505/1‑140 (MQ=255)
                                                                                        ccTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAgg                                              >  1:164841/1‑140 (MQ=255)
                                                                                         cTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAACCCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGa                                             <  2:1054611/140‑1 (MQ=255)
                                                                                           gCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGaaa                                           <  1:27595/140‑1 (MQ=255)
                                                                                           gCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGaaa                                           >  1:1338632/1‑140 (MQ=255)
                                                                                            cACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAg                                          >  1:316000/1‑140 (MQ=255)
                                                                                            cACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAg                                          >  2:1047314/1‑140 (MQ=255)
                                                                                            cACCCGCACCTGTGATGATGGCGCATTTTCCGCCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAAcc                                                    >  2:156770/1‑130 (MQ=255)
                                                                                            cACCCGCACCTGTGATGATGGCGCATTTTCCGCCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAAcc                                                    <  1:156770/130‑1 (MQ=255)
                                                                                             aCCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAgg                                         >  2:497651/1‑140 (MQ=255)
                                                                                             aCCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACA‑TTTTTATCATTAACCTTGAGGAAAGGa                                        >  2:318684/1‑140 (MQ=255)
                                                                                              cccGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGa                                        <  2:372795/140‑1 (MQ=255)
                                                                                              cccGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGa                                        <  1:1114630/140‑1 (MQ=255)
                                                                                              cccGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGa                                        <  2:1338632/140‑1 (MQ=255)
                                                                                               ccGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACA‑TTTTTATCATTAACCTTGAGGAAAGGaca                                      <  1:318684/140‑1 (MQ=255)
                                                                                                cGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGaca                                      <  1:1390256/140‑1 (MQ=255)
                                                                                                cGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGaca                                      <  2:752839/140‑1 (MQ=255)
                                                                                                cGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGaca                                      <  1:967214/140‑1 (MQ=255)
                                                                                                 gCACCTGTGATGATGGCGCTTTTTCCGTCGAGTCTCAGGCTGTCAG‑ATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGa                                        <  2:867153/136‑1 (MQ=255)
                                                                                                 gCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGacac                                     >  1:1266467/1‑140 (MQ=255)
                                                                                                 gCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAG‑ATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGa                                        >  1:867153/1‑136 (MQ=255)
                                                                                                  cACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGa                                        <  1:1067232/136‑1 (MQ=255)
                                                                                                  cACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGa                                        >  2:1067232/1‑136 (MQ=255)
                                                                                                  cACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACt                                    >  2:434302/1‑140 (MQ=255)
                                                                                                  cACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACt                                    >  1:417897/1‑140 (MQ=255)
                                                                                                   cccTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTa                                   <  1:347735/139‑1 (MQ=255)
                                                                                                   aCCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTa                                   <  2:1377716/140‑1 (MQ=255)
                                                                                                   aCCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTa                                   <  1:497651/140‑1 (MQ=255)
                                                                                                     cTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTAcc                                 <  1:1117659/140‑1 (MQ=255)
                                                                                                     cTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTAcc                                 <  2:1266467/140‑1 (MQ=255)
                                                                                                     cTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTAcc                                 <  2:7790/140‑1 (MQ=255)
                                                                                                      tgtgATGATGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCa                                >  2:1370961/1‑140 (MQ=255)
                                                                                                         gatgatGGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGt                             >  1:957310/1‑140 (MQ=255)
                                                                                                           tgatgGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGtat                           <  2:957310/140‑1 (MQ=255)
                                                                                                             atgGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTa                                   <  1:6993/130‑1 (MQ=255)
                                                                                                             atgGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTa                                   >  2:6993/1‑130 (MQ=255)
                                                                                                             atgGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAg                         <  1:463920/140‑1 (MQ=255)
                                                                                                             atgGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAg                         >  1:1411765/1‑140 (MQ=255)
                                                                                                             atgGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAg                         <  2:775314/140‑1 (MQ=255)
                                                                                                              tgGCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGc                        <  1:273195/140‑1 (MQ=255)
                                                                                                               ggCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCa                       >  1:855604/1‑140 (MQ=255)
                                                                                                               ggCGCATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCa                       >  1:352708/1‑140 (MQ=255)
                                                                                                                 cgcATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTAc                                  <  1:781653/127‑1 (MQ=255)
                                                                                                                 cgcATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTAc                                  >  2:781653/1‑127 (MQ=255)
                                                                                                                  gcATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGAt                    <  2:316000/140‑1 (MQ=255)
                                                                                                                  gcATTTTCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGAt                    <  1:1370961/140‑1 (MQ=255)
                                                                                                                     ttttCCGTCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATaaa                 <  2:404311/140‑1 (MQ=255)
                                                                                                                            tCGAGTCTCAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACCACCAGGTATAGCAGATAAAGAGAGGa          >  1:325080/1‑140 (MQ=255)
                                                                                                                                 tctcAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAAGAGAGGattatt     >  2:1181459/1‑140 (MQ=255)
                                                                                                                                    cAGGCTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAAGAGAGGATTATTTCg  <  1:1181459/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
AACATGGTTAGCTGCGTCGGCGTTAATATCACTGACCACCACAGATGCGCCAGCTGTCGCGAATGTAATGGCGATTTCTTTACCAATACCTGCACCCGCACCTGTGATGATGGCGCATTTTCCGTCGAGTCTCAGGTTGTCAGAATTAAACACATAAACCTCCTGTGAACTTCAGTAAAAATAAAAGGCACCGCCTGTGTGCCACATTTTTTATCATTAACCTTGAGGAAAGGACACTACCAGGTATAGCAGATAAAGAGAGGATTATTTCG  >  NC_000913/1697888‑1698159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A