Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,160,544 T→C V720A (GTA→GCA)  mdtC → multidrug efflux pump RND permease subunit MdtC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,160,5440TC100.0% 233.8 / NA 68V720A (GTA→GCA) mdtCmultidrug efflux pump RND permease subunit MdtC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (18/50);  total (18/50)

AGAATGGGAGCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGTACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATACCCAGGACATCAGTGCGC  >  NC_000913/2160407‑2160672
                                                                                                                                         |                                                                                                                                
agaATGGGAGCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCAc                                                                                                                                <  1:497623/140‑1 (MQ=255)
agaATGGGAGCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCAc                                                                                                                                <  1:818566/140‑1 (MQ=255)
  aaTGGGAGCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACaa                                                                                                                              <  1:803258/140‑1 (MQ=255)
   aTGGGAGCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAg                                                                                                                             >  1:1060294/1‑140 (MQ=255)
    tGGGAGCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAgc                                                                                                                            <  2:888155/140‑1 (MQ=255)
    tGGGAGCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGACACGGCTGGGAATCGACGCACAAgc                                                                                                                            <  2:1328832/140‑1 (MQ=255)
         gCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCa                                                                                                                       <  2:912604/140‑1 (MQ=255)
          ccGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCaa                                                                                                                      <  1:722832/140‑1 (MQ=255)
           cGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAAc                                                                                                                     >  2:932055/1‑140 (MQ=255)
           cGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAAc                                                                                                                     >  2:523185/1‑140 (MQ=255)
            gAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACa                                                                                                                    <  2:1169253/140‑1 (MQ=255)
            gAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACa                                                                                                                    <  1:93554/140‑1 (MQ=255)
            gAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACa                                                                                                                    <  1:446336/140‑1 (MQ=255)
            gAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACa                                                                                                                    <  2:686571/140‑1 (MQ=255)
            gAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACa                                                                                                                    <  1:1143064/140‑1 (MQ=255)
              aaaTCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGt                                                                                                                  <  1:536012/140‑1 (MQ=255)
                aTCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCt                                                                                                                >  2:473107/1‑140 (MQ=255)
                               gCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCtt                                                                                                 >  1:960599/1‑140 (MQ=255)
                                 gACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCg                                                                                               <  1:473107/140‑1 (MQ=255)
                                         cGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCgg                                                                                       <  2:1204376/140‑1 (MQ=255)
                                          ggAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGc                                                                                      <  2:511075/140‑1 (MQ=255)
                                          ggAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGc                                                                                      <  2:1060294/140‑1 (MQ=255)
                                               tGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAAtc                                                                                 >  2:275739/1‑140 (MQ=255)
                                                ggCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTTAGCGGCAAAtct                                                                                >  1:935859/1‑140 (MQ=255)
                                                 gCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAAtctc                                                                               <  1:523185/140‑1 (MQ=255)
                                                 gCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAAtctc                                                                               <  1:275739/140‑1 (MQ=255)
                                                   ggACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGa                                                                             <  2:1018011/140‑1 (MQ=255)
                                                     aCGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCgg                                                                                       <  1:729353/128‑1 (MQ=255)
                                                     aCGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCgg                                                                                       >  2:729353/1‑128 (MQ=255)
                                                           aCTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTAc                                                                     <  2:1016329/140‑1 (MQ=255)
                                                            cTCCGATAAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTAcc                                                                    <  1:1240882/140‑1 (MQ=255)
                                                               cGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGc                                                                 >  1:895548/1‑140 (MQ=255)
                                                                 aTCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCg                                                               >  2:689995/1‑140 (MQ=255)
                                                                  tCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGa                                                              <  2:1188851/140‑1 (MQ=255)
                                                                  tCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGa                                                              <  2:748450/140‑1 (MQ=255)
                                                                  tCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGa                                                              <  1:1385548/140‑1 (MQ=255)
                                                                  tCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGa                                                              <  1:51477/140‑1 (MQ=255)
                                                                    agcagGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATg                                                            >  1:990459/1‑140 (MQ=255)
                                                                    agcagGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATg                                                            >  2:1269802/1‑140 (MQ=255)
                                                                      cagGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGaa                                                          <  2:960599/140‑1 (MQ=255)
                                                                      cagGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGaa                                                          <  2:1168450/140‑1 (MQ=255)
                                                                      cagGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGaa                                                          <  1:339264/140‑1 (MQ=255)
                                                                      cagGATAACGGCGCGGAGATGAATCTGGTTTACGACCGAGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGaa                                                          <  2:192685/140‑1 (MQ=255)
                                                                       agGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAAc                                                         <  1:932055/140‑1 (MQ=255)
                                                                          aTAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAg                                                      <  2:725336/140‑1 (MQ=255)
                                                                                   cgGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGtata                                                  >  2:752427/1‑135 (MQ=255)
                                                                                   cgGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGtata                                                  <  1:752427/135‑1 (MQ=255)
                                                                                   cgGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAgtg                                             >  2:1144422/1‑140 (MQ=255)
                                                                                   cgGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAgtg                                             >  1:841305/1‑140 (MQ=255)
                                                                                       gaTGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGa                                         <  1:163625/140‑1 (MQ=255)
                                                                                               tGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTg                                 <  1:1144422/140‑1 (MQ=255)
                                                                                                  tttACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGAt                              <  1:625398/140‑1 (MQ=255)
                                                                                                  tttACGACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGAt                              <  1:563153/140‑1 (MQ=255)
                                                                                                       gACCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCcgcg                         <  2:841305/140‑1 (MQ=255)
                                                                                                        aCCGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCgcgc                        >  1:1207245/1‑140 (MQ=255)
                                                                                                         ccGCGATACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCt                       <  1:1293683/140‑1 (MQ=255)
                                                                                                         ccGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCt                       <  1:796407/140‑1 (MQ=255)
                                                                                                         ccGCGACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCt                       <  2:1207245/140‑1 (MQ=255)
                                                                                                            cgACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCtata                    <  2:895548/140‑1 (MQ=255)
                                                                                                            cgACACCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCtata                    <  2:1030459/140‑1 (MQ=255)
                                                                                                              acacCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATAcc                  <  2:347983/140‑1 (MQ=255)
                                                                                                              acacCATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATAcc                  <  1:106188/140‑1 (MQ=255)
                                                                                                                 ccATGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATACCCAg               <  1:689995/140‑1 (MQ=255)
                                                                                                                   aTGGCACGGCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATACCCAGGa             <  2:881187/140‑1 (MQ=255)
                                                                                                                           gCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATACCCAg               >  1:489609/1‑130 (MQ=255)
                                                                                                                           gCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATACCCAg               <  2:489609/130‑1 (MQ=255)
                                                                                                                           gCTGGGAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATACCCAGGACATCAGTg     >  1:1312428/1‑140 (MQ=255)
                                                                                                                              gggAATCGACGCACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATACCCAGGACATCAGTgcgc  <  1:787924/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                
AGAATGGGAGCCGAAAATCCGCAAAAAACTGGCGACGTTGCCGGAACTGGCGGACGTGAACTCCGATCAGCAGGATAACGGCGCGGAGATGAATCTGGTTTACGACCGCGACACCATGGCACGGCTGGGAATCGACGTACAAGCCGCCAACAGTCTGTTAAATAACGCCTTCGGTCAGCGGCAAATCTCGACCATTTACCAGCCGATGAACCAGTATAAAGTGGTGATGGAAGTGGATCCGCGCTATACCCAGGACATCAGTGCGC  >  NC_000913/2160407‑2160672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A