Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,211,175	G→C	intergenic (+231/‑50)	yehQ → / → yehR	SWIM zinc finger domains‑containing protein YehQ/DUF1307 domain‑containing lipoprotein YehR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,211,175	0	G	C	100.0%	249.3 / NA	68	intergenic (+231/‑50)	yehQ/yehR	SWIM zinc finger domains‑containing protein YehQ/DUF1307 domain‑containing lipoprotein YehR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (37/31); total (37/31)

TGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAAAGAAGAATC  >  NC_000913/2211042‑2211310

tGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTg                                                                                                                                   >  1:1345880/1‑140 (MQ=255)

      aCGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTgaga                                                                                                                             <  1:836725/140‑1 (MQ=255)

            ttttGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCAcc                                                                                                                       >  1:410262/1‑140 (MQ=255)

                 ctttgcGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTc                                                                                                                  >  1:357403/1‑140 (MQ=255)

                   ttgcGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCt                                                                                                                <  2:387427/140‑1 (MQ=255)

                   ttgcGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCt                                                                                                                <  2:1409601/140‑1 (MQ=255)

                      cGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGa                                                                                                             >  2:476998/1‑140 (MQ=255)

                      cGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGa                                                                                                             >  2:13848/1‑140 (MQ=255)

                                  ccccATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATg                                                                                                 <  1:9098/140‑1 (MQ=255)

                                  ccccATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATg                                                                                                 <  1:476998/140‑1 (MQ=255)

                                   cccATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATgg                                                                                                <  2:373921/140‑1 (MQ=255)

                                     cATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAg                                                                                              >  1:690438/1‑140 (MQ=255)

                                     cATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAg                                                                                              >  1:1258065/1‑140 (MQ=255)

                                       tGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGtt                                                                                            >  2:275781/1‑140 (MQ=255)

                                       tGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGtt                                                                                            <  1:275781/140‑1 (MQ=255)

                                       tGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGtt                                                                                            >  2:1188237/1‑140 (MQ=255)

                                       tGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGtt                                                                                            >  1:783927/1‑140 (MQ=255)

                                        gCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATg                                                                                                 >  2:761629/1‑134 (MQ=255)

                                        gCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATg                                                                                                 <  1:761629/134‑1 (MQ=255)

                                            cAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACa                                                                                       >  1:237119/1‑140 (MQ=255)

                                               caacaaGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGa                                                                                    <  1:960846/140‑1 (MQ=255)

                                               caacaaGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGa                                                                                    <  2:1086927/140‑1 (MQ=255)

                                               caacaaGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGa                                                                                    <  1:13848/140‑1 (MQ=255)

                                                  caaGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATg                                                                                                 <  2:1286945/124‑1 (MQ=255)

                                                  caaGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATg                                                                                                 >  1:1286945/1‑124 (MQ=255)

                                                   aaGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGc                                                                                <  1:900170/140‑1 (MQ=255)

                                                   aaGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGc                                                                                <  1:1104522/140‑1 (MQ=255)

                                                         gAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCaa                                                                          >  2:67765/1‑140 (MQ=255)

                                                          aaaTAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAAt                                                                         <  2:1345880/140‑1 (MQ=255)

                                                                tGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATa                                                                        <  1:823585/135‑1 (MQ=255)

                                                                tGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATa                                                                        >  2:823585/1‑135 (MQ=255)

                                                                tGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTg                                                                   >  2:1039679/1‑140 (MQ=255)

                                                                                   tACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCAt                                                >  1:68075/1‑140 (MQ=255)

                                                                                   tACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCAt                                                <  1:1381246/140‑1 (MQ=255)

                                                                                    tcTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATc                                               <  2:992353/139‑1 (MQ=255)

                                                                                    aCTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATc                                               <  2:237119/140‑1 (MQ=255)

                                                                                          gTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCt                                         <  1:952214/140‑1 (MQ=255)

                                                                                           ttCCGGACTGCTCACGCAACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGACGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTg                                        <  2:1258065/140‑1 (MQ=255)

                                                                                              cGGACTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGtt                                     <  2:68075/140‑1 (MQ=255)

                                                                                                  cTGCTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTtct                                 <  1:26039/140‑1 (MQ=255)

                                                                                                     cTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTtctctc                              >  2:1240419/1‑140 (MQ=255)

                                                                                                     cTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTtctctc                              >  1:1074293/1‑140 (MQ=255)

                                                                                                     cTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTtctctc                              >  2:893187/1‑140 (MQ=255)

                                                                                                     cTCACGCCACGGTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTtctctc                              >  1:534850/1‑140 (MQ=255)

                                                                                                               ggTATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTgctggctg                    >  1:997846/1‑140 (MQ=255)

                                                                                                                 tATTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCg                  <  1:133270/140‑1 (MQ=255)

                                                                                                                  aTTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCgg                 <  2:1074293/140‑1 (MQ=255)

                                                                                                                  aTTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCgg                 <  2:410262/140‑1 (MQ=255)

                                                                                                                  aTTAGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCgg                 <  2:357403/140‑1 (MQ=255)

                                                                                                                     aGGCATATCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGa              <  1:280618/140‑1 (MQ=255)

                                                                                                                          tatCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCCGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCgg                 <  1:333999/132‑1 (MQ=255)

                                                                                                                          tatCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCCGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCgg                 >  2:333999/1‑132 (MQ=255)

                                                                                                                           atCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaaga        >  1:197477/1‑140 (MQ=255)

                                                                                                                           atCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaaga        >  2:635891/1‑140 (MQ=255)

                                                                                                                           atCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaaga        >  2:481449/1‑140 (MQ=255)

                                                                                                                           atCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaaga        >  2:272458/1‑140 (MQ=255)

                                                                                                                           atCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaaga        >  1:77079/1‑140 (MQ=255)

                                                                                                                           atCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaaga        >  2:1174431/1‑140 (MQ=255)

                                                                                                                           atCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaaga        >  1:333456/1‑140 (MQ=255)

                                                                                                                           atCCTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaaga        >  1:810526/1‑140 (MQ=255)

                                                                                                                             ccTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGa              >  1:1330029/1‑132 (MQ=255)

                                                                                                                             ccTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGa              <  2:1330029/132‑1 (MQ=255)

                                                                                                                             ccTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaagaag      >  2:228899/1‑140 (MQ=255)

                                                                                                                             ccTATATACCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAaagaag      >  1:1158349/1‑140 (MQ=255)

                                                                                                                                atataCCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAAAGAAGAAt   <  1:431714/140‑1 (MQ=255)

                                                                                                                                 tataCCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAAAGAAGAATc  >  2:182697/1‑140 (MQ=255)

                                                                                                                                 tataCCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAAAGAAGAATc  >  2:609957/1‑140 (MQ=255)

                                                                                                                                 tataCCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAAAGAAGAATc  >  1:218308/1‑140 (MQ=255)

TGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATGAAATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCTGGTGAGAGTCACCAGTTCCTTGATTAAATAAAATGGAGTTTTACATGAAGGCTTTCAATAAGCTGTTTTCCCTCGTTGTTGCATCTGTTCTGGTTTTCTCTCTTGCTGGCTGCGGTGACAAAGAAGAATC  >  NC_000913/2211042‑2211310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A