Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,351,935 T→C H147R (CAC→CGC)  glpT ← sn‑glycerol 3‑phosphate:phosphate antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,351,9350TC100.0% 344.1 / NA 94H147R (CAC→CGC) glpTsn‑glycerol 3‑phosphate:phosphate antiporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (50/44);  total (50/44)

ATATAGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGCCGCCGCC  >  NC_000913/2351800‑2352069
                                                                                                                                       |                                                                                                                                       
atatAGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCGCCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCAc                                                                                                                                     <  2:933913/140‑1 (MQ=255)
 tataGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCAcc                                                                                                                                    <  2:1165611/140‑1 (MQ=255)
 tataGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCAcc                                                                                                                                    >  1:232044/1‑140 (MQ=255)
 tataGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCAcc                                                                                                                                    >  1:914501/1‑140 (MQ=255)
   taGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCAt                                                                                                                                  <  2:1055180/140‑1 (MQ=255)
     gagCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAg                                                                                                                                <  2:907240/140‑1 (MQ=255)
     gagCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAg                                                                                                                                <  1:703607/140‑1 (MQ=255)
     gagCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAg                                                                                                                                >  1:907240/1‑140 (MQ=255)
      agCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGt                                                                                                                               >  2:309352/1‑140 (MQ=255)
        cgccgcATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTAc                                                                                                                             >  1:565443/1‑140 (MQ=255)
        cgccgcATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTAc                                                                                                                             >  1:631611/1‑140 (MQ=255)
        cgccgcATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTAc                                                                                                                             >  1:921220/1‑140 (MQ=255)
        cgccgcATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTAc                                                                                                                             >  1:98124/1‑140 (MQ=255)
        cgccgcATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTAc                                                                                                                             >  2:1075516/1‑140 (MQ=255)
        cgccgcATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTAc                                                                                                                             >  2:623939/1‑140 (MQ=255)
          ccgcATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGa                                                                                                                           >  1:316302/1‑140 (MQ=255)
             cATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCTCACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACca                                                                                                                        >  1:812370/1‑140 (MQ=255)
             cATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACca                                                                                                                        >  2:891391/1‑140 (MQ=255)
                     tCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACAcggcgg                                                                                                                <  1:881150/140‑1 (MQ=255)
                     tCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACAcggcgg                                                                                                                >  2:994944/1‑140 (MQ=255)
                      cATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACggcggc                                                                                                               <  1:309352/140‑1 (MQ=255)
                       aTTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGcc                                                                                                              <  2:295754/140‑1 (MQ=255)
                       aTTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGcc                                                                                                              <  2:565443/140‑1 (MQ=255)
                         tGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑c                                                                                                           >  2:7186/1‑140 (MQ=255)
                          gAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑cc                                                                                                          <  1:254183/140‑1 (MQ=255)
                             ccAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCa                                                                                                       >  2:711238/1‑140 (MQ=255)
                             ccAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCa                                                                                                       <  1:705597/140‑1 (MQ=255)
                              cAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCAt                                                                                                      <  2:921220/140‑1 (MQ=255)
                                ggCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATcc                                                                                                    >  2:153564/1‑140 (MQ=255)
                                ggCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATcc                                                                                                    >  2:514482/1‑140 (MQ=255)
                                 gCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATccc                                                                                                   >  1:784725/1‑140 (MQ=255)
                                 gCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATccc                                                                                                   <  2:232044/140‑1 (MQ=255)
                                  ccATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATcccc                                                                                                  >  2:758068/1‑140 (MQ=255)
                                  ccATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATcccc                                                                                                  <  1:994944/140‑1 (MQ=255)
                                              ggAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCg                                                                                      <  1:433998/140‑1 (MQ=255)
                                               gAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGc                                                                                     >  1:677073/1‑140 (MQ=255)
                                                 aCAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCag                                                                                   >  1:734899/1‑140 (MQ=255)
                                                  cagcagCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGc                                                                                     <  2:800238/137‑1 (MQ=255)
                                                  cagcagCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGc                                                                                     >  1:800238/1‑137 (MQ=255)
                                                  cagcagCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCaga                                                                                  <  1:400256/140‑1 (MQ=255)
                                                     cagcGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGaaccaac                                                                                        <  2:297902/131‑1 (MQ=255)
                                                     cagcGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGaaccaac                                                                                        >  1:297902/1‑131 (MQ=255)
                                                        cggcggAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGaaca                                                                            <  2:871622/140‑1 (MQ=255)
                                                        cggcggAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGaaca                                                                            <  1:1405339/140‑1 (MQ=255)
                                                         ggcggAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGaacaa                                                                           <  1:514482/140‑1 (MQ=255)
                                                         ggcggAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGaacaa                                                                           <  2:784725/140‑1 (MQ=255)
                                                           cggAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCATGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAacaaca                                                                         <  2:378615/140‑1 (MQ=255)
                                                               aTACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTAc                                                                     >  2:698533/1‑140 (MQ=255)
                                                                tACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACa                                                                    <  1:758068/140‑1 (MQ=255)
                                                                  ccaccaccGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACaaa                                                                  <  1:1075516/140‑1 (MQ=255)
                                                                  ccaccaccGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACaaa                                                                  <  2:914501/140‑1 (MQ=255)
                                                                  ccaccaccGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACaaa                                                                  <  2:631611/140‑1 (MQ=255)
                                                                        ccGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCAc                                                            >  2:320901/1‑140 (MQ=255)
                                                                        ccGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCAc                                                            >  1:1147807/1‑140 (MQ=255)
                                                                          gACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCg                                                          <  1:7186/140‑1 (MQ=255)
                                                                           aCGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGc                                                         <  1:320901/140‑1 (MQ=255)
                                                                                 tgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACaaa                                                                  >  1:797432/1‑125 (MQ=255)
                                                                                 tgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACaaa                                                                  <  2:797432/125‑1 (MQ=255)
                                                                                 tgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCt                                                   <  1:891391/140‑1 (MQ=255)
                                                                                     cacaGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGAc                                               >  1:1144627/1‑140 (MQ=255)
                                                                                        aGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTc                                            <  1:153564/140‑1 (MQ=255)
                                                                                         gTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCg                                           >  1:179453/1‑140 (MQ=255)
                                                                                         gTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCg                                           >  2:938431/1‑140 (MQ=255)
                                                                                          ttCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGc                                          >  1:566468/1‑140 (MQ=255)
                                                                                           tCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGcc                                         <  1:383599/140‑1 (MQ=255)
                                                                                            ccACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGccc                                        <  1:1154175/140‑1 (MQ=255)
                                                                                              acacTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCAt                                      <  1:729479/140‑1 (MQ=255)
                                                                                                  tGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCACCCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGc                                   >  1:467666/1‑140 (MQ=255)
                                                                                                    acacAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGccc                                        >  1:602565/1‑132 (MQ=255)
                                                                                                    acacAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGccc                                        <  2:602565/132‑1 (MQ=255)
                                                                                                    acacAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcaca                                >  1:526046/1‑140 (MQ=255)
                                                                                                    acacAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcaca                                >  2:1223773/1‑140 (MQ=255)
                                                                                                    acacAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcaca                                >  2:1090263/1‑140 (MQ=255)
                                                                                                    acacAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcaca                                >  2:745939/1‑140 (MQ=255)
                                                                                                    acacAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcaca                                >  2:269346/1‑140 (MQ=255)
                                                                                                    acacAATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcaca                                >  1:130152/1‑140 (MQ=255)
                                                                                                     cacaATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACaa                               <  1:269346/140‑1 (MQ=255)
                                                                                                      acaATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACaaa                              >  1:1030942/1‑140 (MQ=255)
                                                                                                      acaATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACaaa                              <  2:677073/140‑1 (MQ=255)
                                                                                                       caATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAg                             >  1:971512/1‑140 (MQ=255)
                                                                                                       caATGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAg                             >  1:1156795/1‑140 (MQ=255)
                                                                                                          tGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCTTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGccc                          >  2:1283215/1‑140 (MQ=255)
                                                                                                          tGCCGCCACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGccc                          >  1:1051289/1‑140 (MQ=255)
                                                                                                           gccgccACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCa                         <  1:903900/140‑1 (MQ=255)
                                                                                                           gccgccACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCa                         <  1:711238/140‑1 (MQ=255)
                                                                                                             cgccACGTTCATTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATa                       <  2:1224358/140‑1 (MQ=255)
                                                                                                              gccACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAg                             >  1:846156/1‑133 (MQ=255)
                                                                                                              gccACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAg                             <  2:846156/133‑1 (MQ=255)
                                                                                                              gccACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATaa                      >  2:1131932/1‑140 (MQ=255)
                                                                                                                cACGTTCTTTCTGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAaac                    >  2:669942/1‑140 (MQ=255)
                                                                                                                       tttctGCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCa             <  2:1154627/140‑1 (MQ=255)
                                                                                                                            gCGACCACCAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTgcc        <  2:130152/140‑1 (MQ=255)
                                                                                                                               accaccAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTgccgcc     >  1:1338158/1‑140 (MQ=255)
                                                                                                                               accaccAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTgccgcc     >  1:1104114/1‑140 (MQ=255)
                                                                                                                               accaccAGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTgccgcc     >  1:581082/1‑140 (MQ=255)
                                                                                                                                  accaGCGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTgccgccgcc  <  2:597361/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
ATATAGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCA‑CCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGCCGCCGCC  >  NC_000913/2351800‑2352069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A