Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,393,379 A→G I556I (ATT→ATC)  nuoL ← NADH:quinone oxidoreductase subunit L

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,393,3790AG100.0% 299.2 / NA 81I556I (ATT→ATC) nuoLNADH:quinone oxidoreductase subunit L
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (32/49);  total (32/49)

ACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCA  >  NC_000913/2393244‑2393513
                                                                                                                                       |                                                                                                                                      
aCCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATAc                                                                                                                                    >  2:1012258/1‑140 (MQ=255)
aCCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATAc                                                                                                                                    >  2:530965/1‑140 (MQ=255)
aCCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATAc                                                                                                                                    >  2:64339/1‑140 (MQ=255)
    aTGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAg                                                                                                                                >  2:1389720/1‑140 (MQ=255)
        tCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAAc                                                                                                                            >  2:1131077/1‑140 (MQ=255)
           tGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGc                                                                                                                         <  1:1132493/140‑1 (MQ=255)
           tGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGc                                                                                                                         <  1:1232516/140‑1 (MQ=255)
            ggATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCt                                                                                                                        <  2:970099/140‑1 (MQ=255)
              aTGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTg                                                                                                                      <  2:1275006/140‑1 (MQ=255)
                gCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGAc                                                                                                                    >  2:1349723/1‑140 (MQ=255)
                 ccACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACg                                                                                                                   <  1:80838/140‑1 (MQ=255)
                 ccACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACg                                                                                                                   <  1:1079222/140‑1 (MQ=255)
                   acaTACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGaa                                                                                                                 <  1:961533/140‑1 (MQ=255)
                     aTACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAaca                                                                                                               <  1:1389720/140‑1 (MQ=255)
                     aTACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAaca                                                                                                               <  2:436117/140‑1 (MQ=255)
                     aTACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAaca                                                                                                               <  1:931207/140‑1 (MQ=255)
                     aTACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAaca                                                                                                               <  2:488682/140‑1 (MQ=255)
                       aCCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACt                                                                                                             <  1:64339/140‑1 (MQ=255)
                       aCCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACt                                                                                                             <  1:1154606/140‑1 (MQ=255)
                        ccAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAaca                                                                                                               >  2:409215/1‑137 (MQ=255)
                        ccAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAaca                                                                                                               <  1:409215/137‑1 (MQ=255)
                         cAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACttt                                                                                                           <  1:1267799/140‑1 (MQ=255)
                         cAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACttt                                                                                                           <  1:934511/140‑1 (MQ=255)
                         cAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACttt                                                                                                           >  2:96412/1‑140 (MQ=255)
                            cgcAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAaca                                                                                                               >  1:916599/1‑133 (MQ=255)
                            cgcAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAaca                                                                                                               <  2:916599/133‑1 (MQ=255)
                            cgcAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTc                                                                                                        >  1:408622/1‑140 (MQ=255)
                               aGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATa                                                                                                     <  2:583628/140‑1 (MQ=255)
                                 aTAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACt                                                                                                             >  2:1116539/1‑130 (MQ=255)
                                 aTAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACt                                                                                                             <  1:1116539/130‑1 (MQ=255)
                                    gCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGcc                                                                                                <  2:890529/140‑1 (MQ=255)
                                        ttCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTc                                                                                            <  1:1262121/140‑1 (MQ=255)
                                          ctcACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCaa                                                                                          <  2:158467/140‑1 (MQ=255)
                                                tAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATcccc                                                                                    <  2:745793/140‑1 (MQ=255)
                                                tAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATcccc                                                                                    <  1:1349723/140‑1 (MQ=255)
                                                  aCAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAg                                                                                  >  1:645653/1‑140 (MQ=255)
                                                   cagcagACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAgg                                                                                 <  2:221787/140‑1 (MQ=255)
                                                   cagcagACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAgg                                                                                 <  1:546160/140‑1 (MQ=255)
                                                    agcagACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGc                                                                                <  1:1012258/140‑1 (MQ=255)
                                                     gcagACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCg                                                                               <  2:595539/140‑1 (MQ=255)
                                                       agACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGtt                                                                             >  1:1274421/1‑140 (MQ=255)
                                                       agACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGtt                                                                             <  1:168558/140‑1 (MQ=255)
                                                       agACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGtt                                                                             >  2:1190326/1‑140 (MQ=255)
                                                       agACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGtt                                                                             >  2:277438/1‑140 (MQ=255)
                                                         aCCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGt                                                                           >  2:1084837/1‑140 (MQ=255)
                                                            tttACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTacc                                                                        <  2:966067/140‑1 (MQ=255)
                                                                   gCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATAGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGt                                                                 >  1:2875/1‑140 (MQ=255)
                                                                    cAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTg                                                                >  1:578084/1‑140 (MQ=255)
                                                                     aaaGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGt                                                                           <  1:884451/128‑1 (MQ=255)
                                                                     aaaGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGt                                                                           >  2:884451/1‑128 (MQ=255)
                                                                     aaaGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGc                                                               >  1:460422/1‑140 (MQ=255)
                                                                     aaaGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGc                                                               >  1:69983/1‑140 (MQ=255)
                                                                               aGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACg                                                     <  1:1148064/140‑1 (MQ=255)
                                                                                 gACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGc                                                   >  2:1027461/1‑140 (MQ=255)
                                                                                   cAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGccc                                                 >  2:1020791/1‑140 (MQ=255)
                                                                                      ccGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGgc                                              <  2:57221/140‑1 (MQ=255)
                                                                                       cGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGgcg                                             >  2:339256/1‑140 (MQ=255)
                                                                                       cGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGgcg                                             <  1:1364647/140‑1 (MQ=255)
                                                                                       cGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGgcg                                             <  1:428683/140‑1 (MQ=255)
                                                                                                   catTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGa                                 <  2:97206/140‑1 (MQ=255)
                                                                                                   catTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGa                                 >  2:1273802/1‑140 (MQ=255)
                                                                                                     ttGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATg                               <  1:1131077/140‑1 (MQ=255)
                                                                                                      tGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGa                                 >  2:1198139/1‑137 (MQ=255)
                                                                                                      tGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGa                                 <  1:1198139/137‑1 (MQ=255)
                                                                                                      tGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATg                               <  2:1371677/139‑1 (MQ=255)
                                                                                                      tGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATg                               >  1:1371677/1‑139 (MQ=255)
                                                                                                       gAGTTCAGCGGATAGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGa                             <  2:2875/140‑1 (MQ=255)
                                                                                                        aGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAg                            >  2:1051906/1‑140 (MQ=255)
                                                                                                        aGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAg                            >  1:823412/1‑140 (MQ=255)
                                                                                                        aGTTCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAg                            >  1:733124/1‑140 (MQ=255)
                                                                                                          ttCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGt                          >  1:178994/1‑140 (MQ=255)
                                                                                                          ttCAGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGt                          <  2:794377/140‑1 (MQ=255)
                                                                                                             aGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCa                        <  2:621897/139‑1 (MQ=255)
                                                                                                             aGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCa                        >  1:621897/1‑139 (MQ=255)
                                                                                                             aGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCAc                       <  1:1027461/140‑1 (MQ=255)
                                                                                                             aGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCAc                       <  1:530965/140‑1 (MQ=255)
                                                                                                             aGCGGATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCAc                       <  1:96412/140‑1 (MQ=255)
                                                                                                                 gATCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCaga                   <  2:178994/140‑1 (MQ=255)
                                                                                                                  aTCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCagag                  <  2:823412/140‑1 (MQ=255)
                                                                                                                  aTCGCGTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCagag                  >  2:167893/1‑140 (MQ=255)
                                                                                                                    cgcgTTTCAGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTa                >  1:1380961/1‑140 (MQ=255)
                                                                                                                            aGCAACCAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTAcc        <  1:783740/140‑1 (MQ=255)
                                                                                                                                  cAGGCGATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCcagcca  <  1:427972/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
ACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCA  >  NC_000913/2393244‑2393513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A