Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
191 |
83.5 |
2830284 |
99.3% |
2810472 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,457,767 |
T→C |
T465A (ACA→GCA) |
fadJ ← |
3‑hydroxyacyl‑CoA dehydrogenase FadJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,457,767 | 0 | T | C | 98.6%
| 261.0
/ ‑6.0
| 73 | T465A (ACA→GCA) | fadJ | 3‑hydroxyacyl‑CoA dehydrogenase FadJ |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (33/39); total (33/40) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CATGCGGATAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGTCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAGCAAAG > NC_000913/2457633‑2457903
|
cATGCGGATAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCg > 1:466640/1‑140 (MQ=255)
cATGCGGATAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCg > 1:1219450/1‑140 (MQ=255)
gCGGATAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCAt < 1:764826/140‑1 (MQ=255)
cGGATAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATg > 2:992183/1‑140 (MQ=255)
cGGATAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATg < 1:615940/140‑1 (MQ=255)
gATAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAg < 2:273384/140‑1 (MQ=255)
tAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGa < 2:466640/140‑1 (MQ=255)
tAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGa < 1:563408/140‑1 (MQ=255)
aGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGaa < 1:787370/140‑1 (MQ=255)
cTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGaata > 1:872643/1‑140 (MQ=255)
ttAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAAtctc > 1:32229/1‑140 (MQ=255)
tAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATg < 1:245062/127‑1 (MQ=255)
tAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATg > 2:245062/1‑127 (MQ=255)
gTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTccacca > 1:1161713/1‑140 (MQ=255)
tAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAg > 1:1082350/1‑140 (MQ=255)
aGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCg > 2:116257/1‑140 (MQ=255)
aGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCg > 1:921243/1‑140 (MQ=255)
aGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCg > 1:333250/1‑140 (MQ=255)
ggCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCgg > 2:108018/1‑140 (MQ=255)
ggCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCgg > 1:500176/1‑140 (MQ=255)
gcgcTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGc < 2:1219450/140‑1 (MQ=255)
cTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCAtt > 1:23975/1‑140 (MQ=255)
cTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCAtt > 1:588702/1‑140 (MQ=255)
tAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCAttt > 1:1030081/1‑140 (MQ=255)
tAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCAttt > 1:165154/1‑140 (MQ=255)
aaGATGCGATTGACGTAAAAACCGGCTTTGTCACGCTCGTCAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGTCCCCGCATGAGGAATAATCTCCACCAGCGGCAtttt < 1:1013382/140‑1 (MQ=255)
aaGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCAtttt < 1:727913/140‑1 (MQ=255)
cGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCAc < 2:687790/140‑1 (MQ=255)
tGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCCATGGTTTGCGCCGATGCCGCCGCATGAGGAATAACCGCCGCCAGCGGCATTTTTTCCACCGGa < 2:147478/140‑1 (MQ=255)
gACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGAc < 2:32229/140‑1 (MQ=255)
gACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGAc < 1:108018/140‑1 (MQ=255)
gACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGAc < 2:771295/140‑1 (MQ=255)
cGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTg > 2:683965/1‑140 (MQ=255)
cGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTg > 2:505971/1‑140 (MQ=255)
aaCCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCTGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCAc < 2:30296/127‑1 (MQ=255)
aaCCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCTGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCAc > 1:30296/1‑127 (MQ=255)
cGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGc > 1:271824/1‑140 (MQ=255)
ggCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCa < 2:23975/140‑1 (MQ=255)
cTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAgg > 2:130863/1‑140 (MQ=255)
tGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGAc > 1:1007452/1‑123 (MQ=255)
tGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGAc < 2:1007452/123‑1 (MQ=255)
tGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCg < 1:1177055/140‑1 (MQ=255)
tGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCg < 2:921243/140‑1 (MQ=255)
tGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCg < 1:116257/140‑1 (MQ=255)
cgcacgACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAAc > 2:112010/1‑140 (MQ=255)
gACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCt > 2:1036514/1‑140 (MQ=255)
ttACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCgcgtggc < 2:165154/140‑1 (MQ=255)
aCCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCgcgtggcgt > 2:1412006/1‑140 (MQ=255)
gTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAgcg < 2:1082350/140‑1 (MQ=255)
ttttttCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAgcgg > 2:1315478/1‑140 (MQ=255)
ttttCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAgcggcg < 2:333250/140‑1 (MQ=255)
tttCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGa < 2:1030081/140‑1 (MQ=255)
tttCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGa < 1:858526/140‑1 (MQ=255)
tttCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGa < 1:113823/140‑1 (MQ=255)
aGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCGCCACCAGCGGCATTTTTTCCCCCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCAcc < 2:500176/140‑1 (MQ=255)
gTTTTACTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCa < 2:271824/140‑1 (MQ=255)
aCTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCgg < 1:1146333/140‑1 (MQ=255)
cTGTGGTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGt < 1:1408610/140‑1 (MQ=255)
ggTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAg < 1:1412006/140‑1 (MQ=255)
ggTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAg < 1:683965/140‑1 (MQ=255)
gTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGa > 2:114291/1‑140 (MQ=255)
gTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGa > 1:503149/1‑140 (MQ=255)
gTAGCGATGGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGa > 1:606956/1‑140 (MQ=255)
gTAGCGATAGTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGa > 2:1070163/1‑140 (MQ=255)
gTTTGCGCCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTAtt < 2:503149/140‑1 (MQ=255)
cgcCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAg < 2:433571/140‑1 (MQ=255)
cgcCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAg < 1:1070163/140‑1 (MQ=255)
cgcCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAg < 2:669339/140‑1 (MQ=255)
cgcCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAg > 1:669339/1‑140 (MQ=255)
cgcCGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAg > 1:352676/1‑140 (MQ=255)
ccGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAGCa < 1:1101743/140‑1 (MQ=255)
ccGATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAGCa < 2:1284598/140‑1 (MQ=255)
gATGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAGCaaa < 1:992183/140‑1 (MQ=255)
aTGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAGCAAAg < 1:505971/140‑1 (MQ=255)
aTGCCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAGCAAAg < 2:606956/140‑1 (MQ=255)
|
CATGCGGATAGCTTCATTAATGTAAGGCGCTAAGATGCGATTGACGTAAAAACCGGCTTTGTCACGCACGACAATTGGCGTTTTACCCTGTTTTTTCGCCAGTTTTACTGTGGTAGCGATGGTTTGCGCCGATGTCCCCGCATGAGGAATAATCTCCACCAGCGGCATTTTTTCCACCGGACTGAAGAAATGCAGGCCGATAACTTGCTCAGGTCGCGTGGCGTGAGCGGCGATATCACCAATCGGTAAAGATGACGTATTCGAAGCAAAG > NC_000913/2457633‑2457903
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
