Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
191 |
83.5 |
2830284 |
99.3% |
2810472 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,772,330 |
Δ1 bp |
pseudogene (853/1016 nt) |
yfjV ← |
CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,772,327 | 0 | G | . | 100.0%
| 387.3
/ NA
| 89 | pseudogene (856/1016 nt) | yfjV | CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (40/49); total (40/49) |
CCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTTCATCACTGA > NC_000913/2772188‑2772460
|
ccacgccaGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCg > 2:789001/1‑140 (MQ=255)
ccacgccaGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCg > 2:66260/1‑140 (MQ=255)
gccaGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCgggtg < 1:545086/140‑3 (MQ=255)
aGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGAtt > 2:1124860/1‑140 (MQ=255)
cgcgGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGAtttt < 1:1124860/140‑1 (MQ=255)
cgcgGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGAtttt < 1:137209/140‑1 (MQ=255)
cgcgGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGAtttt > 1:1287239/1‑140 (MQ=255)
gCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCggg < 1:804836/140‑1 (MQ=255)
cAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGcc < 1:618498/140‑1 (MQ=255)
cAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGcc < 2:1352117/140‑1 (MQ=255)
agagTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCt < 2:1066635/140‑1 (MQ=255)
tGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAAt < 2:741156/140‑1 (MQ=255)
aCAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATca < 2:1165801/140‑1 (MQ=255)
cAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATcac < 2:636489/140‑1 (MQ=255)
aaaCAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATcaca < 2:164007/140‑1 (MQ=255)
cAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGcc > 1:1008066/1‑140 (MQ=255)
cACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAAt < 2:1096685/140‑1 (MQ=255)
ccGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATca > 2:240257/1‑140 (MQ=255)
ccGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATca > 1:840474/1‑140 (MQ=255)
ggCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATcaca < 2:1036099/140‑1 (MQ=255)
ggCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATcaca < 1:463072/140‑1 (MQ=255)
ggCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATcaca < 2:1053823/140‑1 (MQ=255)
ggCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATcaca < 2:1335792/140‑1 (MQ=255)
gCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACAt < 1:836264/140‑1 (MQ=255)
cacaGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACAtc > 1:470911/1‑139 (MQ=255)
gTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCa < 2:1287239/140‑1 (MQ=255)
gTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCa > 2:1354142/1‑140 (MQ=255)
tCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCAt < 1:1226258/140‑1 (MQ=255)
aTGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCAtt > 1:563494/1‑140 (MQ=255)
aTGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCAtt < 2:609022/140‑1 (MQ=255)
tGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTg > 2:350583/1‑140 (MQ=255)
tGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTg > 2:726181/1‑140 (MQ=255)
tGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTg < 2:1008066/140‑1 (MQ=255)
tGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGAAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTg > 2:312641/1‑140 (MQ=255)
gCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGc < 2:1240628/140‑1 (MQ=255)
gCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGc < 1:1155518/140‑1 (MQ=255)
gCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGc < 1:1155517/140‑1 (MQ=255)
gCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGc > 2:938752/1‑140 (MQ=255)
gCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGc < 2:74278/140‑1 (MQ=255)
gCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGc > 1:770261/1‑140 (MQ=255)
gCCGGTACGGAAGTAATACCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGc > 1:1122374/1‑140 (MQ=255)
atatCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGcc > 1:191617/1‑140 (MQ=255)
tCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGt < 1:1172718/140‑1 (MQ=255)
tCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGt < 1:457253/140‑1 (MQ=255)
cccAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCg > 1:563042/1‑140 (MQ=255)
cccAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCg > 2:891901/1‑140 (MQ=255)
cAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGcc < 1:1078373/140‑1 (MQ=255)
cAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGcc > 1:1293681/1‑140 (MQ=255)
aaGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGt > 1:745899/1‑135 (MQ=255)
aaGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGt < 2:745899/135‑1 (MQ=255)
aGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGt > 2:55552/1‑140 (MQ=255)
gTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTa < 2:807984/140‑1 (MQ=255)
gATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACt < 1:184974/140‑1 (MQ=255)
aTTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTc > 1:572391/1‑140 (MQ=255)
ttGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTcc < 2:869626/140‑1 (MQ=255)
ttGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTcc < 1:240257/140‑1 (MQ=255)
ttGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTcc < 1:938752/140‑1 (MQ=255)
tGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTccc > 2:370925/1‑140 (MQ=255)
tGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTccc > 1:629794/1‑140 (MQ=255)
cTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTcc < 1:1337031/127‑1 (MQ=255)
cTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTcc > 2:1337031/1‑127 (MQ=255)
cTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAg > 2:969727/1‑140 (MQ=255)
cTGGGCAAGCACATGCAGCCACAGCAGAACTGCCAGACTAACAATCATCAATA‑TTTCGGTCCTAAATCATATCTAATCACATTGGCATAATTCATTGATTCTTTGAAGACGCCAGTCTCCGTACTCCCGTCAATCGACaa > 2:835538/1‑139 (MQ=255)
gggCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAgcg < 2:563494/140‑1 (MQ=255)
gCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCa < 2:267255/140‑1 (MQ=255)
gCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCa < 1:55552/140‑1 (MQ=255)
gCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCa < 2:494760/140‑1 (MQ=255)
gCACATGCAGCCACAGCAGAGTTGCCAGACTGCTAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCaa > 2:1269712/1‑140 (MQ=255)
tGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGc > 1:1313087/1‑140 (MQ=255)
tGCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGc < 2:593412/140‑1 (MQ=255)
gCAGCCACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTGTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCa > 2:1231044/1‑140 (MQ=255)
ccACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGt > 2:1092225/1‑140 (MQ=255)
ccACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGt > 1:357241/1‑140 (MQ=255)
ccACAGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGt < 2:1194768/140‑1 (MQ=255)
acaGCAGAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCg > 2:1128570/1‑140 (MQ=255)
agcagAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGc > 2:126631/1‑140 (MQ=255)
agcagAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGc < 2:52879/140‑1 (MQ=255)
agcagAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGc < 2:203241/140‑1 (MQ=255)
agcagAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGc > 1:203241/1‑140 (MQ=255)
agcagAGTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGc > 1:52879/1‑140 (MQ=255)
agagTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCata < 1:370925/140‑1 (MQ=255)
gTTGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTg > 1:575606/1‑140 (MQ=255)
ttGCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGt > 1:374932/1‑140 (MQ=255)
gCCAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTtc > 2:1047566/1‑140 (MQ=255)
ccAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTtca > 2:191831/1‑140 (MQ=255)
ccAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTtca > 1:933245/1‑140 (MQ=255)
cAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTtcat < 1:807065/140‑1 (MQ=255)
cAGACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTtcat < 2:840474/140‑1 (MQ=255)
gACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTtcatca < 1:1054636/140‑1 (MQ=255)
gACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTtcatca < 2:629794/140‑1 (MQ=255)
gACTGCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTtcatca < 1:126631/140‑1 (MQ=255)
gCCAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTTCATCACtga > 2:1302938/1‑140 (MQ=255)
ccAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCata > 1:987468/1‑125 (MQ=255)
ccAATC‑GGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCata < 2:987468/125‑1 (MQ=255)
|
CCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGTACTCCCGTCAATCGACAGCGCACCAATCAGCACCGTCGGCATATTGTTCATCACTGA > NC_000913/2772188‑2772460
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
