Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,772,591	A→G	pseudogene (592/1016 nt)	yfjV ←	CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,772,591	0	A	G	100.0%	241.7 / NA	68	pseudogene (592/1016 nt)	yfjV	CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (33/35); total (33/35)

CTGATGAGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACTGACCAGGATTCCCTG  >  NC_000913/2772457‑2772727

cTGATGAGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGccc                                                                                                                                     <  2:1112439/140‑1 (MQ=255)

 tgatgaGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCa                                                                                                                                    >  1:1056163/1‑140 (MQ=255)

 tgatgaGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCa                                                                                                                                    >  1:997586/1‑140 (MQ=255)

   atgaGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGt                                                                                                                                  >  1:856853/1‑140 (MQ=255)

   atgaGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGt                                                                                                                                  >  2:446014/1‑140 (MQ=255)

   atgaGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGt                                                                                                                                  >  1:555668/1‑140 (MQ=255)

   atgaGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGt                                                                                                                                  >  2:744267/1‑140 (MQ=255)

    tgaGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTg                                                                                                                                 <  2:265919/140‑1 (MQ=255)

        agaAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGcc                                                                                                                                      >  1:1253928/1‑131 (MQ=255)

        agaAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGcc                                                                                                                                      <  2:1253928/131‑1 (MQ=255)

        agaAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGaa                                                                                                                             >  2:694234/1‑140 (MQ=255)

           aaTGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAAt                                                                                                                          <  2:856853/140‑1 (MQ=255)

           aaTGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAAt                                                                                                                          >  2:86224/1‑140 (MQ=255)

             tGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATaa                                                                                                                        >  1:606994/1‑140 (MQ=255)

             tGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATaa                                                                                                                        >  2:859264/1‑140 (MQ=255)

                  tCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATc                                                                                                                   >  2:1144785/1‑140 (MQ=255)

                      gaagCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGcc                                                                                                               <  1:1171576/140‑1 (MQ=255)

                              tGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCa                                                                                                       <  2:281844/140‑1 (MQ=255)

                              tGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCa                                                                                                       <  2:628388/140‑1 (MQ=255)

                              tGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCa                                                                                                       <  1:446014/140‑1 (MQ=255)

                                 cGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACcg                                                                                                    <  2:106788/140‑1 (MQ=255)

                                 cGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACcg                                                                                                    >  2:42675/1‑140 (MQ=255)

                                      gTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAg                                                                                               <  2:558473/140‑1 (MQ=255)

                                         gCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc                                                                                            <  2:1192588/140‑1 (MQ=255)

                                         gCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc                                                                                            <  1:278289/140‑1 (MQ=255)

                                              ccATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTc                                                                                       <  1:42675/140‑1 (MQ=255)

                                                       cTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGa                                                                              >  2:1068710/1‑140 (MQ=255)

                                                        ttGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTc                                                                                       <  2:1192042/130‑1 (MQ=255)

                                                        ttGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTc                                                                                       >  1:1192042/1‑130 (MQ=255)

                                                          gTCTGCCAGCAGATTTAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCg                                                                           >  2:112338/1‑140 (MQ=255)

                                                            cTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGAt                                                                             <  1:32556/136‑1 (MQ=255)

                                                            cTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGAt                                                                             >  2:32556/1‑136 (MQ=255)

                                                               ccAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGa                                                                      >  2:230162/1‑140 (MQ=255)

                                                                       ttCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCtttt                                                              <  1:744267/140‑1 (MQ=255)

                                                                          aGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGc                                                           <  1:533700/140‑1 (MQ=255)

                                                                             aCGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGccac                                                        >  2:324568/1‑140 (MQ=255)

                                                                                 cAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACcaca                                                    <  2:555668/140‑1 (MQ=255)

                                                                                      aGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAg                                               <  1:830967/140‑1 (MQ=255)

                                                                                      aGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAg                                               <  1:147321/140‑1 (MQ=255)

                                                                                             ccGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCActgct                                        >  1:468104/1‑140 (MQ=255)

                                                                                              cGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCActgctg                                       <  1:112338/140‑1 (MQ=255)

                                                                                              cGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCActgctg                                       >  2:384730/1‑140 (MQ=255)

                                                                                              cGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCActgctg                                       >  1:152158/1‑140 (MQ=255)

                                                                                                  aaCCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGcc                                   >  1:1022189/1‑140 (MQ=255)

                                                                                                  aaCCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGcc                                   >  1:594678/1‑140 (MQ=255)

                                                                                                  aaCCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGcc                                   >  2:300363/1‑140 (MQ=255)

                                                                                                  aaCCCTGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAAAAGCACTGCTGCGcc                                   >  1:760048/1‑140 (MQ=255)

                                                                                                       tGCATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCgg                              >  2:105241/1‑140 (MQ=255)

                                                                                                         cATTGCGCAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGcc                            >  1:212047/1‑140 (MQ=255)

                                                                                                              cgcAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTAt                       >  2:114881/1‑140 (MQ=255)

                                                                                                              cgcAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTAt                       >  1:205164/1‑140 (MQ=255)

                                                                                                                cAGGCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCg                     <  2:606994/140‑1 (MQ=255)

                                                                                                                  ggCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCa                   <  1:1068710/140‑1 (MQ=255)

                                                                                                                  ggCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCa                   <  1:924222/140‑1 (MQ=255)

                                                                                                                  ggCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCa                   <  1:1144785/140‑1 (MQ=255)

                                                                                                                  ggCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCa                   <  1:230162/140‑1 (MQ=255)

                                                                                                                  ggCCATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCACTATCGCa                   <  2:997586/140‑1 (MQ=255)

                                                                                                                    ccATAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACt                 <  1:86224/140‑1 (MQ=255)

                                                                                                                      aTAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACTGa               <  1:673632/140‑1 (MQ=255)

                                                                                                                      aTAGACCACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACTGa               <  1:324568/140‑1 (MQ=255)

                                                                                                                            cACGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACTGACCAGGa         <  2:468104/140‑1 (MQ=255)

                                                                                                                             aCGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCa                   <  1:313432/129‑1 (MQ=255)

                                                                                                                             aCGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCa                   >  2:313432/1‑129 (MQ=255)

                                                                                                                             aCGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACTGACCAGGAt        >  2:140528/1‑140 (MQ=255)

                                                                                                                              cGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCa                   <  2:724173/128‑1 (MQ=255)

                                                                                                                              cGATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCa                   >  1:724173/1‑128 (MQ=255)

                                                                                                                               gATGTACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACTGACCAGGATTc      <  2:227954/140‑1 (MQ=255)

                                                                                                                                   tACGTGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACTGACCAGGATTCCCTg  <  1:114881/140‑1 (MQ=255)

CTGATGAGAGAAATGCCGTCAAGAAGCCGGTGCCGAACGTCGCTGCCCATAACCCCTTGTCTGCCAGCAGATTCAGCACGCCAGACAGGTACTCCGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACAAACAGCACTGCTGCGCCAGCGGCCGCTATCGCACTGACCAGGATTCCCTG  >  NC_000913/2772457‑2772727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A