Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,965,822	T→C	G72G (GGA→GGG)	lgt ←	phosphatidylglycerol‑‑prolipoprotein diacylglyceryl transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,965,822	0	T	C	100.0%	201.3 / NA	55	G72G (GGA→GGG)	lgt	phosphatidylglycerol‑‑prolipoprotein diacylglyceryl transferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/25); total (30/25)

GGGCGAAGATAATCATCACCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCAGGC  >  NC_000913/2965686‑2965958

gggcgAAGATAATCATCACCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGcccc                                                                                                                                       <  2:1084717/140‑1 (MQ=255)

        aTAATCATCACCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGaa                                                                                                                               <  2:789328/140‑1 (MQ=255)

            tcatcaCCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACg                                                                                                                           >  1:1140010/1‑140 (MQ=255)

                   cacGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGa                                                                                                                    <  1:750534/140‑1 (MQ=255)

                      gATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGc                                                                                                                 <  1:1028694/140‑1 (MQ=255)

                          aCGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGc                                                                                                             <  1:249834/140‑1 (MQ=255)

                           cGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCa                                                                                                            >  1:413460/1‑140 (MQ=255)

                           cGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCa                                                                                                            <  1:1305715/140‑1 (MQ=255)

                                aTCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATagag                                                                                                       >  2:224734/1‑140 (MQ=255)

                                     gccgccGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGt                                                                                                  >  2:405662/1‑140 (MQ=255)

                                     gccgccGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGt                                                                                                  >  1:303877/1‑140 (MQ=255)

                                        gccgTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGtttt                                                                                               <  2:1140010/140‑1 (MQ=255)

                                        gccgTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGtttt                                                                                               <  2:3773/140‑1 (MQ=255)

                                                    cATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCAtttt                                                                                   >  1:1289495/1‑140 (MQ=255)

                                                        ccgccgTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGt                                                                               >  1:1075629/1‑140 (MQ=255)

                                                             gTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGTCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGc                                                                          <  1:1151145/140‑1 (MQ=255)

                                                             gTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGc                                                                          <  1:1028862/140‑1 (MQ=255)

                                                              tCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGcc                                                                         >  2:304851/1‑140 (MQ=255)

                                                               cccAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCg                                                                        <  1:148762/140‑1 (MQ=255)

                                                                        ggAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGa                                                               >  2:659275/1‑140 (MQ=255)

                                                                             aGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGAtt                                                          >  2:658135/1‑140 (MQ=255)

                                                                               aTACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCg                                                        >  2:931400/1‑140 (MQ=255)

                                                                                  cAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGccc                                                     <  1:658135/140‑1 (MQ=255)

                                                                                   aGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCcg                                                    <  1:524870/140‑1 (MQ=255)

                                                                                    gCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCcgt                                                   >  1:718774/1‑140 (MQ=255)

                                                                                    gCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCcgt                                                   >  2:503211/1‑140 (MQ=255)

                                                                                     cGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCcgtc                                                  <  2:1075629/140‑1 (MQ=255)

                                                                                     cGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCcgtc                                                  <  2:413460/140‑1 (MQ=255)

                                                                                        aTCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCgtg                                               >  2:603489/1‑140 (MQ=255)

                                                                                        aTCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCgtg                                               >  1:241/1‑140 (MQ=255)

                                                                                         tCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCgtgt                                              >  2:382098/1‑140 (MQ=255)

                                                                                             ccATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTgcc                                          >  1:181181/1‑140 (MQ=255)

                                                                                                       cGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTg                                >  1:163631/1‑140 (MQ=255)

                                                                                                       cGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTg                                >  2:680896/1‑140 (MQ=255)

                                                                                                       cGGGAAATTGTAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTg                                >  2:461984/1‑140 (MQ=255)

                                                                                                                 tAGAACAGAACATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGaa                      <  1:931400/140‑1 (MQ=255)

                                                                                                                  agaacagaacATAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGaaa                     <  1:848890/140‑1 (MQ=255)

                                                                                                                      cagaacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACcca                 <  1:1174952/140‑1 (MQ=255)

                                                                                                                      cagaacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACcca                 >  1:74850/1‑140 (MQ=255)

                                                                                                                      cagaacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACcca                 <  1:659275/140‑1 (MQ=255)

                                                                                                                      cagaacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACcca                 >  2:1174952/1‑140 (MQ=255)

                                                                                                                       agaacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACccac                <  2:241/140‑1 (MQ=255)

                                                                                                                        gaacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGaa                      <  1:765080/133‑1 (MQ=255)

                                                                                                                        gaacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGaa                      >  2:765080/1‑133 (MQ=255)

                                                                                                                        gaacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACccacc               <  2:303877/140‑1 (MQ=255)

                                                                                                                         aacaTAACCAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACccacca              >  1:882805/1‑140 (MQ=255)

                                                                                                                                ccAATACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACAt       >  2:1371225/1‑140 (MQ=255)

                                                                                                                                  aaTACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCa     <  1:1371225/140‑1 (MQ=255)

                                                                                                                                   aTACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAAc                    <  1:866051/124‑1 (MQ=255)

                                                                                                                                   aTACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCAg    >  2:441631/1‑140 (MQ=255)

                                                                                                                                   aTACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCAg    >  2:151543/1‑140 (MQ=255)

                                                                                                                                   aTACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCAg    >  1:964605/1‑140 (MQ=255)

                                                                                                                                   aTACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCAg    >  1:1282859/1‑140 (MQ=255)

                                                                                                                                   aTACGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACAGTGCAAAAATGAAAc                    >  2:866051/1‑124 (MQ=255)

                                                                                                                                     aCGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCAGGc  <  2:163631/140‑1 (MQ=255)

                                                                                                                                     aCGCCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCAGGc  <  2:882805/140‑1 (MQ=255)

GGGCGAAGATAATCATCACCACGATAACGCCAATCAGGCCGCCGTGGAAAGACATGCCGCCGTCCCAGACACGGAACAGATACAGCGGATCGGCCATAAACTGCGGGAAATTGTAGAACAGAACATAACCAATACGTCCCCCGAGGAAGACGCCGAGGAAGCCCGCATAGAGTAAGTTTTCAACTTCATTTTTGGTCCAGCCGCTGCCCGGACGATTCGCCCGTCGTGTTGCCAGCCACATTGCAAAAATGAAACCCACCAGATACATCAGGC  >  NC_000913/2965686‑2965958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A