Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,981,789 T→C T132A (ACC→GCC)  araE ← arabinose:H(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,981,7890TC100.0% 409.6 / NA 112T132A (ACC→GCC) araEarabinose:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (63/49);  total (63/49)

Only 100 of 118 total aligned reads displayed.

CGCTATAACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGCCC  >  NC_000913/2981660‑2981924
                                                                                                                                 |                                                                                                                                       
cGCTATAACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGAcgcg                                                                                                                               <  2:628303/140‑1 (MQ=255)
     taACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATccc                                                                                                                          >  2:404254/1‑140 (MQ=255)
     taACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATccc                                                                                                                          >  2:1121070/1‑140 (MQ=255)
     taACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATccc                                                                                                                          <  2:1291272/140‑1 (MQ=255)
           aaCGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGc                                                                                                                    >  2:579041/1‑140 (MQ=255)
            aCGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCa                                                                                                                   >  1:8109/1‑140 (MQ=255)
            aCGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCa                                                                                                                   <  2:319733/140‑1 (MQ=255)
             cGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCaa                                                                                                                  >  2:1383409/1‑140 (MQ=255)
             cGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCaa                                                                                                                  >  1:332381/1‑140 (MQ=255)
                tGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGc                                                                                                               >  2:579563/1‑140 (MQ=255)
                tGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGc                                                                                                               >  2:432755/1‑140 (MQ=255)
                  tATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGccc                                                                                                             <  1:432755/140‑1 (MQ=255)
                    tCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAg                                                                                                           <  1:1333463/140‑1 (MQ=255)
                       gATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGcac                                                                                                        >  1:132264/1‑140 (MQ=255)
                          aaaaaCGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGcc                                                                                                              >  2:826285/1‑131 (MQ=255)
                          aaaaaCGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGcc                                                                                                              <  1:826285/131‑1 (MQ=255)
                           aaaaCGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACcaca                                                                                                    <  1:1252058/140‑1 (MQ=255)
                                gCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAgc                                                                                               <  2:579763/140‑1 (MQ=255)
                                 ccAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAgcg                                                                                              <  2:692746/140‑1 (MQ=255)
                                  cAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAgcgg                                                                                             >  2:345039/1‑140 (MQ=255)
                                  cAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAgcgg                                                                                             <  2:500043/140‑1 (MQ=255)
                                  cAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAgcgg                                                                                             <  1:1203237/140‑1 (MQ=255)
                                  cAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAgcgg                                                                                             >  1:522541/1‑140 (MQ=255)
                                         aTGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTaa                                                                                      <  2:187344/140‑1 (MQ=255)
                                         aTGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTaa                                                                                      <  1:44758/140‑1 (MQ=255)
                                         aTGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTaa                                                                                      <  2:603601/140‑1 (MQ=255)
                                               aGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACAtctc                                                                                >  2:967889/1‑140 (MQ=255)
                                                  gtgACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTAc                                                                             >  2:140104/1‑140 (MQ=255)
                                                   tgACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACg                                                                            >  2:1216382/1‑140 (MQ=255)
                                                     aCCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCt                                                                          >  1:532902/1‑140 (MQ=255)
                                                     aCCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCt                                                                          >  1:1181278/1‑140 (MQ=255)
                                                         tCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTc                                                                      >  2:474663/1‑140 (MQ=255)
                                                         tCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTc                                                                      >  2:1051171/1‑140 (MQ=255)
                                                          cAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCg                                                                     >  2:23893/1‑140 (MQ=255)
                                                           aaCTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGc                                                                    >  1:353408/1‑140 (MQ=255)
                                                            aCTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCa                                                                   <  1:1051171/140‑1 (MQ=255)
                                                               ggTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCaaaa                                                                >  2:1364490/1‑140 (MQ=255)
                                                                gTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGTGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAg                                                               >  1:684747/1‑140 (MQ=255)
                                                                gTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAg                                                               >  2:341003/1‑140 (MQ=255)
                                                                gTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAg                                                               >  2:854394/1‑140 (MQ=255)
                                                                  aCATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCg                                                             <  2:1413850/140‑1 (MQ=255)
                                                                  aCATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCg                                                             <  1:579563/140‑1 (MQ=255)
                                                                    aTACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGa                                                           <  1:169441/140‑1 (MQ=255)
                                                                    aTACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGa                                                           <  1:884268/140‑1 (MQ=255)
                                                                    aTACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGa                                                           <  2:532902/140‑1 (MQ=255)
                                                                    aTACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGa                                                           <  2:132264/140‑1 (MQ=255)
                                                                     tACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGa                                                           <  1:733733/139‑1 (MQ=255)
                                                                     tACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGa                                                           >  2:733733/1‑139 (MQ=255)
                                                                     tACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGAc                                                          >  2:1278735/1‑140 (MQ=255)
                                                                      aCTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGAcc                                                         >  1:737342/1‑140 (MQ=255)
                                                                      aCTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGAcc                                                         <  1:341003/140‑1 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGc                                                                    >  1:802184/1‑125 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGc                                                                    <  2:802184/125‑1 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGc                                                              <  1:193393/131‑1 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGa                                                           >  2:382965/1‑134 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGa                                                           <  1:382965/134‑1 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCtat                                                     >  2:21271/1‑140 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCtat                                                     >  2:381271/1‑140 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCtat                                                     >  1:764757/1‑140 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCtat                                                     >  1:1081882/1‑140 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCtat                                                     >  2:1093424/1‑140 (MQ=255)
                                                                          atcatcTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGAAAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCtaa                                                     >  2:910523/1‑139 (MQ=255)
                                                                               cTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAAc                                                <  1:631153/140‑1 (MQ=255)
                                                                               cTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAAc                                                <  1:1216382/140‑1 (MQ=255)
                                                                               cTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAAc                                                <  1:339899/140‑1 (MQ=255)
                                                                               cTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAAc                                                <  2:8109/140‑1 (MQ=255)
                                                                                ttACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAAcc                                               <  1:1121070/140‑1 (MQ=255)
                                                                                  aCCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGa                                             >  1:279819/1‑140 (MQ=255)
                                                                                  aCCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGa                                             >  2:315937/1‑140 (MQ=255)
                                                                                  aCCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGa                                             >  1:1333875/1‑140 (MQ=255)
                                                                                  aCCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGa                                             >  2:970587/1‑140 (MQ=255)
                                                                                    cgcgAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGt                                           >  1:1068433/1‑140 (MQ=255)
                                                                                    cgcgAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGt                                           >  2:638896/1‑140 (MQ=255)
                                                                                    cgcgAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGt                                           >  2:623352/1‑140 (MQ=255)
                                                                                    cgcgAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGt                                           >  2:325932/1‑140 (MQ=255)
                                                                                      cgAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTAc                                         >  1:52123/1‑140 (MQ=255)
                                                                                      cgAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTAc                                         >  2:761382/1‑140 (MQ=255)
                                                                                        aaCGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACaa                                       <  2:353408/140‑1 (MQ=255)
                                                                                        aaCGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACaa                                       >  2:690527/1‑140 (MQ=255)
                                                                                         aCGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACaaa                                      >  1:155591/1‑140 (MQ=255)
                                                                                              ttCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGa                                 <  1:381271/140‑1 (MQ=255)
                                                                                              ttCACTTGCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGa                                 <  1:474663/140‑1 (MQ=255)
                                                                                                     gCCATTTCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGcccc                          >  2:918289/1‑140 (MQ=255)
                                                                                                           tCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCAt                    <  1:1093424/140‑1 (MQ=255)
                                                                                                           tCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCAt                    <  2:155591/140‑1 (MQ=255)
                                                                                                           tCAGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCAt                    <  2:52123/140‑1 (MQ=255)
                                                                                                             aGAAAGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCa                  <  1:918289/140‑1 (MQ=255)
                                                                                                               aaaGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAgg                <  2:12029/140‑1 (MQ=255)
                                                                                                               aaaGATACAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAgg                <  1:21271/140‑1 (MQ=255)
                                                                                                                     aCAGAGGAGCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTAt          >  1:659477/1‑140 (MQ=255)
                                                                                                                         aggagCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTAc      >  2:1105288/1‑140 (MQ=255)
                                                                                                                         aggagCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTAc      >  2:1274615/1‑140 (MQ=255)
                                                                                                                           gagCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGc    >  2:63044/1‑140 (MQ=255)
                                                                                                                           gagCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGc    >  2:113275/1‑140 (MQ=255)
                                                                                                                            agCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGcc   >  1:856133/1‑140 (MQ=255)
                                                                                                                            agCGGCGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGcc   >  1:866653/1‑140 (MQ=255)
                                                                                                                             gcggcgTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCAt                    <  1:946873/122‑1 (MQ=255)
                                                                                                                             gcggcgTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCAt                    >  2:946873/1‑122 (MQ=255)
                                                                                                                             gcggcgTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGccc  >  1:582280/1‑140 (MQ=255)
                                                                                                                             gcggcgTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGccc  >  2:439562/1‑140 (MQ=255)
                                                                                                                                 |                                                                                                                                       
CGCTATAACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGCCC  >  NC_000913/2981660‑2981924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A