Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,982,448 T→C intergenic (‑266/+49) araE ← / ← kduD arabinose:H(+) symporter/putative 2‑keto‑3‑deoxy‑D‑gluconate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,982,4480TC100.0% 357.9 / NA 96intergenic (‑266/+49)araE/kduDarabinose:H(+) symporter/putative 2‑keto‑3‑deoxy‑D‑gluconate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (47/49);  total (47/49)

TTCAAATTAAGTTGAATTATTGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCC  >  NC_000913/2982314‑2982583
                                                                                                                                      |                                                                                                                                       
ttCAAATTAAGTTGAATTATTGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATaaa                                                                                                                                    >  2:540011/1‑140 (MQ=255)
   aaaTTAAGTTGAATTATTGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATaaaaac                                                                                                                                 >  2:1286407/1‑139 (MQ=255)
   aaaTTAAGTTGAATTATTGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATaaaaaa                                                                                                                                 <  1:182487/140‑1 (MQ=255)
               attattGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCg                                                                                                                     <  1:1093741/140‑1 (MQ=255)
                 tattGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGc                                                                                                                   <  1:107941/140‑1 (MQ=255)
                 tattGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGc                                                                                                                   <  1:95686/140‑1 (MQ=255)
                 tattGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGc                                                                                                                   <  2:110748/140‑1 (MQ=255)
                   ttGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAg                                                                                                                 <  2:1047840/140‑1 (MQ=255)
                   ttGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAg                                                                                                                 <  2:1221696/140‑1 (MQ=255)
                   ttGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAg                                                                                                                 <  1:715841/140‑1 (MQ=255)
                        attattattAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCa                                                                                                            >  2:821107/1‑140 (MQ=255)
                        attattattAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCa                                                                                                            <  2:910542/140‑1 (MQ=255)
                         ttattattaACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCAT‑AAAAACCCTGCCATGCGGCAGGGTCATa                                                                                                          <  1:1286407/140‑1 (MQ=255)
                          tattattaACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATa                                                                                                          <  2:528535/140‑1 (MQ=255)
                          tattattaACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATa                                                                                                          <  1:1214361/140‑1 (MQ=255)
                          tattattaACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATa                                                                                                          <  2:1028611/140‑1 (MQ=255)
                             tattaACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATaaaa                                                                                                       >  2:617039/1‑140 (MQ=255)
                             tattaACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATaaaa                                                                                                       >  1:325878/1‑140 (MQ=255)
                               ttaACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGt                                                                                                     <  1:250855/140‑1 (MQ=255)
                                  accaccTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTaag                                                                                                  <  2:950490/140‑1 (MQ=255)
                                  accaccTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTaag                                                                                                  >  1:811599/1‑140 (MQ=255)
                                  accaccTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTaag                                                                                                  >  2:106836/1‑140 (MQ=255)
                                      ccTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAagaaga                                                                                              >  1:202988/1‑140 (MQ=255)
                                       cTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAgaagaa                                                                                             <  1:540011/140‑1 (MQ=255)
                                       cTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAgaagaa                                                                                             >  1:953617/1‑140 (MQ=255)
                                       cTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAgaagaa                                                                                             >  1:1027250/1‑140 (MQ=255)
                                              tACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTa                                                                                      >  1:157989/1‑140 (MQ=255)
                                                cagcagATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAAc                                                                                    >  1:966639/1‑140 (MQ=255)
                                                 agcagATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAagaaga                                                                                              >  1:840278/1‑129 (MQ=255)
                                                 agcagATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAagaaga                                                                                              <  2:840278/129‑1 (MQ=255)
                                                   cagATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAAcgcg                                                                                 >  1:531683/1‑140 (MQ=255)
                                                   cagATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAAcgcg                                                                                 >  1:269006/1‑140 (MQ=255)
                                                      aTAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTa                                                                                      <  2:210306/132‑1 (MQ=255)
                                                      aTAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTa                                                                                      >  1:210306/1‑132 (MQ=255)
                                                      aTAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCgcca                                                                              >  2:1033816/1‑140 (MQ=255)
                                                      aTAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCgcca                                                                              >  2:490505/1‑140 (MQ=255)
                                                               aTAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGc                                                                     >  2:31679/1‑140 (MQ=255)
                                                                tAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAACAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGcc                                                                    <  2:966639/140‑1 (MQ=255)
                                                                tAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGcc                                                                    >  2:1002375/1‑140 (MQ=255)
                                                                      tCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCAc                                                              >  1:86835/1‑140 (MQ=255)
                                                                       cATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACg                                                             >  1:268438/1‑140 (MQ=255)
                                                                         ttAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGc                                                           <  1:875508/140‑1 (MQ=255)
                                                                         ttAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGc                                                           <  1:434778/140‑1 (MQ=255)
                                                                         ttAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGc                                                           <  2:40843/140‑1 (MQ=255)
                                                                         ttAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGc                                                           <  1:512079/140‑1 (MQ=255)
                                                                         ttAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGc                                                           <  2:269006/140‑1 (MQ=255)
                                                                          tAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCa                                                          <  2:1027250/140‑1 (MQ=255)
                                                                           aaTTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAGCGCGCCAGCCAACCGCCATCCACGGCaa                                                         <  2:167484/140‑1 (MQ=255)
                                                                           aaTTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCaa                                                         <  1:1256329/140‑1 (MQ=255)
                                                                           aaTTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCaa                                                         <  2:157989/140‑1 (MQ=255)
                                                                           aaTTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCaa                                                         <  2:879704/140‑1 (MQ=255)
                                                                           aaTTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCaa                                                         <  2:334686/140‑1 (MQ=255)
                                                                           aaTTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCaa                                                         <  1:821107/140‑1 (MQ=255)
                                                                                aTAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGta                                                    <  1:106836/140‑1 (MQ=255)
                                                                                 taattaatATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGtat                                                   <  1:1033816/140‑1 (MQ=255)
                                                                                 taattaatATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGtat                                                   <  1:490505/140‑1 (MQ=255)
                                                                                          tGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCAACCACGGCa                                                          >  2:1144165/1‑124 (MQ=255)
                                                                                          tGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCAACCACGGCa                                                          <  1:1144165/124‑1 (MQ=255)
                                                                                           ggATTATTTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTcac                                         <  2:54962/140‑1 (MQ=255)
                                                                                             attattTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGtat                                                   <  1:864972/128‑1 (MQ=255)
                                                                                             attattTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGtat                                                   >  2:864972/1‑128 (MQ=255)
                                                                                              ttattTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATa                                      >  2:608507/1‑140 (MQ=255)
                                                                                              ttattTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATa                                      >  2:126658/1‑140 (MQ=255)
                                                                                               tattTCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATaa                                     >  1:816460/1‑140 (MQ=255)
                                                                                                 tttCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCAGTCACATAATc                                   >  2:868912/1‑140 (MQ=255)
                                                                                                   tCATAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTg                                 <  2:611782/140‑1 (MQ=255)
                                                                                                      tAACCATGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAg                              >  2:367888/1‑140 (MQ=255)
                                                                                                           aTGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTg                         >  2:351091/1‑140 (MQ=255)
                                                                                                            tGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTgg                        <  1:195758/140‑1 (MQ=255)
                                                                                                            tGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTgg                        >  2:723800/1‑140 (MQ=255)
                                                                                                            tGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTgg                        >  2:649912/1‑140 (MQ=255)
                                                                                                            tGATATGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTgg                        >  1:640006/1‑140 (MQ=255)
                                                                                                              atatGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAg                      <  1:351091/140‑1 (MQ=255)
                                                                                                              atatGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTAACATAATCTGAAGCGCTGGAg                      >  2:1023388/1‑140 (MQ=255)
                                                                                                                 tGGATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCa                   <  2:735532/140‑1 (MQ=255)
                                                                                                                   gATTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAg                 >  1:1386616/1‑140 (MQ=255)
                                                                                                                    aTTATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAgg                >  2:180095/1‑140 (MQ=255)
                                                                                                                      tATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGaa              <  1:617039/140‑1 (MQ=255)
                                                                                                                      tATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGaa              <  2:208007/140‑1 (MQ=255)
                                                                                                                      tATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGaa              <  1:367888/140‑1 (MQ=255)
                                                                                                                      tATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTAACATAATCTGAAGCGCTGGAGGCAAGGaa              <  1:1023388/140‑1 (MQ=255)
                                                                                                                      tATGATGATCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCACTCACATAATCTGAAGCGCTGGAGGCAAGGaa              <  2:268438/140‑1 (MQ=255)
                                                                                                                        tgatgaTCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGCATAACCATTCACATAATCTGAAGCGCTGAAGGCAAGGAaca            >  2:1247410/1‑140 (MQ=255)
                                                                                                                        tgatgaTCTACAGGCATAAAAAACCCTGCCATGCGACAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAaca            >  1:962836/1‑140 (MQ=255)
                                                                                                                         gatgatCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAacac           >  2:1139493/1‑140 (MQ=255)
                                                                                                                             atCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATc       >  2:24616/1‑140 (MQ=255)
                                                                                                                              tCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGaa              >  2:945288/1‑132 (MQ=255)
                                                                                                                              tCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGaa              <  1:945288/132‑1 (MQ=255)
                                                                                                                              tCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGa               >  1:249009/1‑131 (MQ=255)
                                                                                                                              tCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGa               <  2:249009/131‑1 (MQ=255)
                                                                                                                              tCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCg      <  1:309667/140‑1 (MQ=255)
                                                                                                                              tCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCg      >  1:98991/1‑140 (MQ=255)
                                                                                                                              tCTACAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACAATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCg      >  1:430962/1‑140 (MQ=255)
                                                                                                                                 aCAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGcc   >  1:591327/1‑140 (MQ=255)
                                                                                                                                  cAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGccc  >  1:526825/1‑140 (MQ=255)
                                                                                                                                  cAGGCATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGccc  >  2:929698/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                       
TTCAAATTAAGTTGAATTATTGAGATTATTATTAACCACCTAATTTTACAGCAGATAAAATTCATAAAGTTCATTAATTGATAATTAATATGGATTATTTCATAACCATGATATGGATTATGATGATCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCC  >  NC_000913/2982314‑2982583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A