Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,982,660 C→T R200Q (CGG→CAG)  kduD ← putative 2‑keto‑3‑deoxy‑D‑gluconate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,982,6600CT100.0% 496.5 / NA 137R200Q (CGG→CAG) kduDputative 2‑keto‑3‑deoxy‑D‑gluconate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (67/70);  total (67/70)

Only 100 of 137 total aligned reads displayed.

GGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAG  >  NC_000913/2982524‑2982792
                                                                                                                                        |                                                                                                                                    
ggCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTa                                                                                                                                   >  2:1180209/1‑140 (MQ=255)
ggCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTa                                                                                                                                   >  1:1263581/1‑140 (MQ=255)
 gCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAg                                                                                                                                  <  1:808346/140‑1 (MQ=255)
 gCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAg                                                                                                                                  <  2:527390/140‑1 (MQ=255)
       gTATACCCATTCATATAAGCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGGCCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGttgttg                                                                                                                            <  1:759985/140‑1 (MQ=255)
          taACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGt                                                                                                                         >  2:1045056/1‑140 (MQ=255)
            aCCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAt                                                                                                                       >  2:1169528/1‑140 (MQ=255)
            aCCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAt                                                                                                                       >  2:1047066/1‑140 (MQ=255)
               aTTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAg                                                                                                                                  <  2:642722/126‑1 (MQ=255)
               aTTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAg                                                                                                                                  >  1:642722/1‑126 (MQ=255)
                ttCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgtt                                                                                                                   >  2:1090260/1‑140 (MQ=255)
                ttCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgtt                                                                                                                   >  1:681131/1‑140 (MQ=255)
                ttCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgtt                                                                                                                   >  1:312082/1‑140 (MQ=255)
                ttCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgtt                                                                                                                   >  1:274493/1‑140 (MQ=255)
                ttCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgt                                                                                                                    >  2:742209/1‑139 (MQ=255)
                ttCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgt                                                                                                                    <  1:742209/139‑1 (MQ=255)
                 tCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCTAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgttg                                                                                                                  >  1:1127159/1‑140 (MQ=255)
                 tCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgttg                                                                                                                  >  1:1233236/1‑140 (MQ=255)
                 tCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgttg                                                                                                                  >  1:1284111/1‑140 (MQ=255)
                 tCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgttg                                                                                                                  >  2:510505/1‑140 (MQ=255)
                 tCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTAttgttg                                                                                                                  >  2:465238/1‑140 (MQ=255)
                  cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAgttg                                                                                                                               <  2:1148078/126‑1 (MQ=255)
                  cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTgg                                                                                                                 >  1:949036/1‑140 (MQ=255)
                  cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTgg                                                                                                                 >  2:179454/1‑140 (MQ=255)
                  cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTgg                                                                                                                 >  1:130698/1‑140 (MQ=255)
                  cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTgg                                                                                                                 >  2:694590/1‑140 (MQ=255)
                     aTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCg                                                                                                              <  2:1284111/140‑1 (MQ=255)
                     aTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCg                                                                                                              <  1:590374/140‑1 (MQ=255)
                        aTCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTc                                                                                                               <  2:1211299/136‑1 (MQ=255)
                        aTCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTc                                                                                                               >  1:1211299/1‑136 (MQ=255)
                          cTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATg                                                                                                         >  2:753/1‑140 (MQ=255)
                              aGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAAc                                                                                                     <  2:836147/140‑1 (MQ=255)
                               gcgcTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAAcc                                                                                                    <  2:706288/140‑1 (MQ=255)
                                  cTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCgg                                                                                                 >  1:518105/1‑140 (MQ=255)
                                    ggAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCgggg                                                                                               <  2:166070/140‑1 (MQ=255)
                                       ggCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTa                                                                                            <  1:683380/140‑1 (MQ=255)
                                            ggAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGca                                                                                       <  1:116890/140‑1 (MQ=255)
                                            ggAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGca                                                                                       <  1:1091521/140‑1 (MQ=255)
                                            ggAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGca                                                                                       >  2:915030/1‑140 (MQ=255)
                                              aaCACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatt                                                                                     <  1:1000779/140‑1 (MQ=255)
                                               acacTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatt                                                                                     <  1:642163/139‑1 (MQ=255)
                                               acacTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatt                                                                                     >  2:642163/1‑139 (MQ=255)
                                                cacTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcattaa                                                                                   <  2:949036/140‑1 (MQ=255)
                                                  cTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcattaaca                                                                                 >  2:401875/1‑140 (MQ=255)
                                                   tATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcattaacat                                                                                >  1:742519/1‑140 (MQ=255)
                                                    aTCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcattaacatt                                                                               >  2:1130593/1‑140 (MQ=255)
                                                     tCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcattaacatta                                                                              >  2:1066513/1‑140 (MQ=255)
                                                        gCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatt                                                                                     <  2:1261386/130‑1 (MQ=255)
                                                        gCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatt                                                                                     >  1:1261386/1‑130 (MQ=255)
                                                        gCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtg                                                                           <  1:23686/140‑1 (MQ=255)
                                                         ccccATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtgt                                                                          <  1:886755/140‑1 (MQ=255)
                                                           ccATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtgttg                                                                        <  1:1130593/140‑1 (MQ=255)
                                                             aTCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtgt                                                                          >  2:296169/1‑136 (MQ=255)
                                                             aTCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTtgtg                                                                      >  2:821806/1‑140 (MQ=255)
                                                             aTCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTtgtg                                                                      >  2:443616/1‑140 (MQ=255)
                                                               cAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGtt                                                                    >  1:1218801/1‑140 (MQ=255)
                                                                 ggTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtgt                                                                          <  1:180054/132‑1 (MQ=255)
                                                                 ggTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtgt                                                                          >  2:180054/1‑132 (MQ=255)
                                                                  gTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAg                                                                 <  1:1066513/140‑1 (MQ=255)
                                                                   tCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGc                                                                >  2:1076747/1‑140 (MQ=255)
                                                                    cACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAA‑CCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGccc                                                              >  2:754091/1‑140 (MQ=255)
                                                                     aCTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGccc                                                              >  2:718494/1‑140 (MQ=255)
                                                                     aCTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGccc                                                              >  2:1266787/1‑140 (MQ=255)
                                                                     aCTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGccc                                                              >  2:1245516/1‑140 (MQ=255)
                                                                             gTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCAttcgttc                                                      >  1:1108631/1‑140 (MQ=255)
                                                                               ccccAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGc                                                    >  2:591198/1‑140 (MQ=255)
                                                                                cccAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCAttcgt                                                        <  2:830999/135‑1 (MQ=255)
                                                                                cccAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCAttcgt                                                        <  2:258776/135‑1 (MQ=255)
                                                                                cccAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCAttcgt                                                        >  1:830999/1‑135 (MQ=255)
                                                                                cccAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCAttcgt                                                        >  1:258776/1‑135 (MQ=255)
                                                                                 ccAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCa                                                  >  1:949774/1‑140 (MQ=255)
                                                                                        ccAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATcg                                           >  1:77662/1‑140 (MQ=255)
                                                                                        ccAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATcg                                           >  1:1286503/1‑140 (MQ=255)
                                                                                           gCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGt                                        <  1:745874/140‑1 (MQ=255)
                                                                                                     ggTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATcgcg                                         >  1:1001233/1‑129 (MQ=255)
                                                                                                      gTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCa                             >  2:780418/1‑140 (MQ=255)
                                                                                                      gTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCa                             >  2:326912/1‑140 (MQ=255)
                                                                                                                tCCGCGCTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCtttt                   <  2:1127159/140‑1 (MQ=255)
                                                                                                                   gcgcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGa                <  1:465238/140‑1 (MQ=255)
                                                                                                                   gcgcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGa                <  2:681131/140‑1 (MQ=255)
                                                                                                                   gcgcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGa                <  2:557969/140‑1 (MQ=255)
                                                                                                                   gcgcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGa                <  1:401875/140‑1 (MQ=255)
                                                                                                                   gcgcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGa                <  2:274493/140‑1 (MQ=255)
                                                                                                                    cgcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGAt               <  2:1271887/140‑1 (MQ=255)
                                                                                                                    cgcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGAt               <  1:388660/140‑1 (MQ=255)
                                                                                                                    cgcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGAt               <  2:312082/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  1:606174/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  1:1045056/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  1:326912/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  1:694590/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  1:1090260/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  2:742519/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  1:1266787/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  1:1169528/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  1:510505/140‑1 (MQ=255)
                                                                                                                     gcTACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg              <  2:518105/140‑1 (MQ=255)
                                                                                                                       tACGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCg            <  1:179454/140‑1 (MQ=255)
                                                                                                                        aCGTTGTTCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCgg           <  1:443616/140‑1 (MQ=255)
                                                                                                                          gttgttCATCTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGta         <  1:591198/140‑1 (MQ=255)
                                                                                                                                   cTGCCTGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGAt               <  1:782836/125‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
GGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAG  >  NC_000913/2982524‑2982792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A