Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,984,223 T→C intergenic (‑99/+188) kduI ← / ← yqeF 5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase/putative acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,984,2230TC100.0% 258.5 / NA 72intergenic (‑99/+188)kduI/yqeF5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase/putative acyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/36);  total (36/36)

GTGCGCACTGTGGATGCTCTGTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGTTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCATTA  >  NC_000913/2984092‑2984359
                                                                                                                                   |                                                                                                                                        
gtgcgCACTGTGGATGCTCTGTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAAtt                                                                                                                                  <  1:789492/140‑1 (MQ=255)
gtgcgCACTGTGGATGCTCTGTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAAtt                                                                                                                                  <  1:22179/140‑1 (MQ=255)
         gtgGATGCTCTGTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATaaa                                                                                                                         >  2:488297/1‑140 (MQ=255)
            gATGCTCTGTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACa                                                                                                                      <  2:1323058/140‑1 (MQ=255)
                ctctGTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGt                                                                                                                  >  1:1090735/1‑140 (MQ=255)
                ctctGTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGt                                                                                                                  >  1:1417351/1‑140 (MQ=255)
                    gTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCG‑TTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCAt                                                                                                             >  1:696662/1‑140 (MQ=255)
                              cacaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTttaagtt                                                                                                    <  2:94617/140‑1 (MQ=255)
                              cacaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTttaagtt                                                                                                    <  2:1091213/140‑1 (MQ=255)
                              cacaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTttaagtt                                                                                                    <  1:993147/140‑1 (MQ=255)
                               acaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCAtttt                                                                                                          <  1:1473939/133‑1 (MQ=255)
                               acaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCAtttt                                                                                                          >  2:1473939/1‑133 (MQ=255)
                               acaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTttaagtta                                                                                                   >  1:303093/1‑140 (MQ=255)
                               acaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTttaagtta                                                                                                   >  1:1001844/1‑140 (MQ=255)
                               acaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTttaagtta                                                                                                   >  1:342672/1‑140 (MQ=255)
                               acaTCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTttaagtta                                                                                                   >  1:483016/1‑140 (MQ=255)
                                     aCCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAACTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGAtt                                                                                             <  2:582805/140‑1 (MQ=255)
                                          cGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTaaaaa                                                                                        <  2:1417351/140‑1 (MQ=255)
                                          cGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTaaaaa                                                                                        <  2:459780/140‑1 (MQ=255)
                                          cGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTaaaaa                                                                                        <  2:483016/140‑1 (MQ=255)
                                          cGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTaaaaa                                                                                        <  1:555195/140‑1 (MQ=255)
                                           gATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTaaaaaa                                                                                       >  1:1393691/1‑140 (MQ=255)
                                               aTCAGTGAAGCGTGAAACTAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAATATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTg                                                                                   <  2:1326374/140‑1 (MQ=255)
                                               aTCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTCTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTg                                                                                   <  2:1388153/140‑1 (MQ=255)
                                                tCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTaaaaa                                                                                        <  2:1164556/134‑1 (MQ=255)
                                                tCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTaaaaa                                                                                        >  1:1164556/1‑134 (MQ=255)
                                                  aGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGGTTTCTCTATAAAGGGATGGTATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAg                                                                                >  2:1327439/1‑140 (MQ=255)
                                                    tGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAgtg                                                                              <  2:66749/140‑1 (MQ=255)
                                                    tGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAgtg                                                                              >  1:427625/1‑140 (MQ=255)
                                                       aGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCg                                                                           >  2:816932/1‑140 (MQ=255)
                                                        gCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGa                                                                          <  2:1003143/140‑1 (MQ=255)
                                                         cGTGAAAATAGAGAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGAt                                                                         <  1:1447224/140‑1 (MQ=255)
                                                         cGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGAt                                                                         <  1:488297/140‑1 (MQ=255)
                                                           tGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCa                                                                       <  2:1090735/140‑1 (MQ=255)
                                                            gAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCAc                                                                      >  1:721518/1‑140 (MQ=255)
                                                               aaTAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGaa                                                                   <  1:1284429/140‑1 (MQ=255)
                                                                aTAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAat                                                                  <  1:870668/140‑1 (MQ=255)
                                                                                   cacTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGaaaa                                               >  1:756490/1‑140 (MQ=255)
                                                                                      tGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATg                                            >  2:1000472/1‑140 (MQ=255)
                                                                                        tttCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAg                                          >  2:128733/1‑140 (MQ=255)
                                                                                        tttCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAg                                          >  1:1082226/1‑140 (MQ=255)
                                                                                        tttCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAg                                          >  1:650318/1‑140 (MQ=255)
                                                                                        tttCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAg                                          >  2:790208/1‑140 (MQ=255)
                                                                                         ttCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAgg                                         <  2:1092785/140‑1 (MQ=255)
                                                                                         ttCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAgg                                         <  2:1186137/140‑1 (MQ=255)
                                                                                            gTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAg                                      <  2:721518/140‑1 (MQ=255)
                                                                                             ttttCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAGTGGAAAAATGAGGGAGc                                     <  2:1001844/140‑1 (MQ=255)
                                                                                              tttCTCTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGcc                                    <  2:427625/140‑1 (MQ=255)
                                                                                                tctcTATAAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCa                                  >  1:246341/1‑140 (MQ=255)
                                                                                                     ataAAGGGATGATATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGaaaa                             <  1:569822/140‑1 (MQ=255)
                                                                                                            gatgatATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAatgtatgt                      >  1:1208273/1‑140 (MQ=255)
                                                                                                              tgatATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCg                    >  2:372409/1‑140 (MQ=255)
                                                                                                              tgatATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCg                    >  1:1291286/1‑140 (MQ=255)
                                                                                                              tgatATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCg                    >  1:649123/1‑140 (MQ=255)
                                                                                                              tgatATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCg                    >  1:644376/1‑140 (MQ=255)
                                                                                                               gatATGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGa                   <  1:1000472/140‑1 (MQ=255)
                                                                                                                atatGCCCATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGAc                  >  1:256591/1‑140 (MQ=255)
                                                                                                                     cccATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTgcc             >  1:58784/1‑140 (MQ=255)
                                                                                                                     cccATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTgcc             <  1:404965/140‑1 (MQ=255)
                                                                                                                     cccATGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTgcc             >  1:218411/1‑140 (MQ=255)
                                                                                                                        aTGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTgccagc          <  2:1208273/140‑1 (MQ=255)
                                                                                                                         tGGGCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTgccagcc         >  1:1387669/1‑140 (MQ=255)
                                                                                                                          gggCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTgccagcca        >  1:360414/1‑140 (MQ=255)
                                                                                                                           ggCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTACGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCcat       <  2:1381449/140‑1 (MQ=255)
                                                                                                                           ggCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTgc              <  2:340693/133‑1 (MQ=255)
                                                                                                                           ggCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTgc              >  1:340693/1‑133 (MQ=255)
                                                                                                                           ggCTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCcat       >  2:1217012/1‑140 (MQ=255)
                                                                                                                             cTAGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCcatca     <  2:58784/140‑1 (MQ=255)
                                                                                                                               aGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCatt   >  2:122573/1‑140 (MQ=255)
                                                                                                                               aGGGCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCatt   >  2:614812/1‑140 (MQ=255)
                                                                                                                                gggCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCatta  <  1:122573/140‑1 (MQ=255)
                                                                                                                                gggCTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCatta  <  1:614812/140‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                        
GTGCGCACTGTGGATGCTCTGTCTTACGTCCACATCAACCTCCGATAATCAGTGAAGCGTGAAAATAGAAAACGATAGTGAAACACTGTTTCGTTTTCTCTATAAAGGGATGATATGCCCATGGGCTAGGGTTTTCAATTAAAAATAAAACAATGTTTCATTTTTAAGTTAAGGATTAAAAAAAGTGCAGTGTCGATCACGAATATGTCATGAGAATGGAAAAATGAGGGAGCCCAGAAAATGTATGTCGACTTGCCAGCCATCATTA  >  NC_000913/2984092‑2984359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A