Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,162,965 G→A P173S (CCG→TCG)  plsC ← 1‑acylglycerol‑3‑phosphate O‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,162,9650GA100.0% 272.8 / NA 83P173S (CCG→TCG) plsC1‑acylglycerol‑3‑phosphate O‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (55/28);  total (55/28)

AGCCAGCTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGGGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCACTACTTCCGC  >  NC_000913/3162828‑3163097
                                                                                                                                         |                                                                                                                                    
agccagcTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCgaga                                                                                                                                    >  1:1035311/1‑140 (MQ=255)
 gccagcTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGAc                                                                                                                                   >  2:1003341/1‑140 (MQ=255)
  ccagcTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGAcg                                                                                                                                  >  1:576925/1‑140 (MQ=255)
  ccagcTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGAcg                                                                                                                                  >  1:520700/1‑140 (MQ=255)
  ccagcTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGAcg                                                                                                                                  >  2:233506/1‑140 (MQ=255)
     gcTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGAcgccc                                                                                                                               <  1:644038/140‑1 (MQ=255)
     gcTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGAcgccc                                                                                                                               >  1:378698/1‑140 (MQ=255)
       tCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACATGGGAATAATCGAGAcgcccgc                                                                                                                             >  1:1351568/1‑140 (MQ=255)
              ccTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACATGGGAATAATCGAGACGCCCGCCGCAAtt                                                                                                                      <  2:1351568/140‑1 (MQ=255)
                tGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGc                                                                                                                    <  1:1003341/140‑1 (MQ=255)
                    cTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCcgcg                                                                                                                <  2:520700/140‑1 (MQ=255)
                       tGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGa                                                                                                             >  1:155456/1‑140 (MQ=255)
                             actgactgACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCt                                                                                                       >  1:503429/1‑140 (MQ=255)
                              ctgactgaCGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTc                                                                                                      <  2:200906/140‑1 (MQ=255)
                              ctgactgaCGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTc                                                                                                      <  2:576925/140‑1 (MQ=255)
                              ctgacggaCGTAAATTGGCGGCAGCATTTCGACAACCCCCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACAGGGGAATAATCGAGCCGCCCGCCGCAATTGCCGCGTGAAATGCTc                                                                                                      <  1:1283631/140‑1 (MQ=255)
                                 actgacGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAg                                                                                                   >  1:874118/1‑140 (MQ=255)
                                 actgacGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAg                                                                                                   >  2:352868/1‑140 (MQ=255)
                                 actgacGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGCGAAATGCTCCAg                                                                                                   >  1:1339977/1‑140 (MQ=255)
                                   tgacGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTc                                                                                                 >  1:1037946/1‑140 (MQ=255)
                                      cGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTg                                                                                              <  1:482049/140‑1 (MQ=255)
                                      cGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTg                                                                                              >  2:458743/1‑140 (MQ=255)
                                      cGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTg                                                                                              >  1:424718/1‑140 (MQ=255)
                                           aTTGGCGGCAGCATTTCGACAATCATCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACgg                                                                                         >  1:246954/1‑140 (MQ=255)
                                            ttGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGt                                                                                        >  1:274406/1‑140 (MQ=255)
                                                    agcaTTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGcc                                                                                >  1:59246/1‑140 (MQ=255)
                                                         ttCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGAc                                                                           <  1:829947/140‑1 (MQ=255)
                                                           cGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCa                                                                         <  1:477672/140‑1 (MQ=255)
                                                             aCAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACg                                                                       <  2:378698/140‑1 (MQ=255)
                                                              cAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACgg                                                                      >  2:741623/1‑140 (MQ=255)
                                                                aTCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGcc                                                                                <  2:178715/128‑1 (MQ=255)
                                                                aTCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGcc                                                                                >  1:1133548/1‑128 (MQ=255)
                                                                aTCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGcc                                                                                <  2:1133548/128‑1 (MQ=255)
                                                                aTCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGcc                                                                                >  1:178715/1‑128 (MQ=255)
                                                                aTCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCt                                                                    >  2:15206/1‑140 (MQ=255)
                                                                aTCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCt                                                                    <  1:906506/140‑1 (MQ=255)
                                                                 tccccAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGCCGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTg                                                                   <  1:933827/137‑1 (MQ=255)
                                                                 tCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTg                                                                   >  1:177993/1‑140 (MQ=255)
                                                                      agcccGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGt                                                              <  1:35741/137‑1 (MQ=255)
                                                                            ttGTGCAGTCGATTTAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGttccttc                                                        <  1:1320661/140‑1 (MQ=255)
                                                                            ttGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGttccttc                                                        >  2:1032893/1‑140 (MQ=255)
                                                                            ttGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGtt                                                             >  2:784360/1‑135 (MQ=255)
                                                                            ttGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGtt                                                             <  1:784360/135‑1 (MQ=255)
                                                                             tgtgCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGttccttcc                                                       >  2:149315/1‑140 (MQ=255)
                                                                               tgCAGTCGATTAAGATTAATCTTATTCGAATTTGTAGAGGCGCCCGCGGAAAAAAGCGGGCCGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCgg                                                     <  2:503429/140‑1 (MQ=255)
                                                                                gCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCggg                                                    <  2:177993/140‑1 (MQ=255)
                                                                                gCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCggg                                                    <  2:1037946/140‑1 (MQ=255)
                                                                                    tCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACa                                                >  2:530950/1‑140 (MQ=255)
                                                                                    tCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACa                                                >  2:443234/1‑140 (MQ=255)
                                                                                       attaagattaaTCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATcc                                             >  1:1009860/1‑140 (MQ=255)
                                                                                        ttaagattaaTCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCa                                            <  2:424718/140‑1 (MQ=255)
                                                                                         taagattaaTCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAg                                           >  1:201808/1‑140 (MQ=255)
                                                                                              ttaaTCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGa                                      >  2:1288846/1‑140 (MQ=255)
                                                                                                aaTCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGaaa                                    >  1:1239826/1‑140 (MQ=255)
                                                                                                  tCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATa                                  >  2:549384/1‑140 (MQ=255)
                                                                                                  tCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATa                                  >  1:133629/1‑140 (MQ=255)
                                                                                                  tCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATa                                  >  2:178525/1‑140 (MQ=255)
                                                                                                    ttATTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACg                                <  1:15206/140‑1 (MQ=255)
                                                                                                      aTTCGAAGTTGTAGAGTCGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGc                              >  2:1106705/1‑140 (MQ=255)
                                                                                                      aTTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGc                              >  2:27231/1‑140 (MQ=255)
                                                                                                      aTTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGc                              <  1:177506/140‑1 (MQ=255)
                                                                                                      aTTCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGc                              >  2:648670/1‑140 (MQ=255)
                                                                                                       ttCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACAt                                               <  1:50021/122‑1 (MQ=255)
                                                                                                       ttCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACAt                                               >  2:50021/1‑122 (MQ=255)
                                                                                                       ttCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCg                             >  2:164717/1‑140 (MQ=255)
                                                                                                       ttCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCg                             >  1:913355/1‑140 (MQ=255)
                                                                                                       ttCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGACCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCg                             >  2:471812/1‑140 (MQ=255)
                                                                                                        tCGAAGTTGTAGAGCCGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACCGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGt                            <  2:1260667/140‑1 (MQ=255)
                                                                                                        tCGAAGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGt                            >  1:77202/1‑140 (MQ=255)
                                                                                                           aaGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGtttt                         <  1:549384/140‑1 (MQ=255)
                                                                                                            aGTTGTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGttttt                        <  2:274406/140‑1 (MQ=255)
                                                                                                                gTAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGaa                    <  1:648670/140‑1 (MQ=255)
                                                                                                                gTAGAGACGCACACGGAAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGaa                    <  1:1132092/140‑1 (MQ=255)
                                                                                                                 tAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAg                   <  2:1009860/140‑1 (MQ=255)
                                                                                                                 tAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAg                   >  1:1122253/1‑140 (MQ=255)
                                                                                                                 tAGAGACGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAg                   <  1:233506/140‑1 (MQ=255)
                                                                                                                   gagaCGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTg                 >  2:1198634/1‑140 (MQ=255)
                                                                                                                    agaCGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGa                <  2:874118/140‑1 (MQ=255)
                                                                                                                      aCGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGAtt              >  1:438559/1‑140 (MQ=255)
                                                                                                                      aCGCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGAtt              >  2:232496/1‑140 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGGGACGCCCGCCTCAATTGCCGCGTGAAACGCTCCACTCTTCAACGTTAGCAGGCTGCGACCACGGCTGCGGGTTCCTTCCAGGAAAATCCAGATGGAAATACGGCGTTTTTTGAAATGATTCa            >  2:689552/1‑140 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGAt               >  1:399425/1‑137 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGAt               <  2:399425/137‑1 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCa            >  1:477409/1‑140 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCa            >  1:1342032/1‑140 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCa            >  2:1228630/1‑140 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCa            >  2:769022/1‑140 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCa            <  1:232496/140‑1 (MQ=255)
                                                                                                                        gCACACGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCa            >  2:280247/1‑140 (MQ=255)
                                                                                                                           cacGGGAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCacta         >  1:199204/1‑140 (MQ=255)
                                                                                                                               gaaataatCGACACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCACTACTTc     <  2:1035311/138‑1 (MQ=255)
                                                                                                                                gAATAATCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCACTACTTcc    >  2:424488/1‑140 (MQ=255)
                                                                                                                                  ataatCGAGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCACTACTTCCGc  >  1:739026/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                    
AGCCAGCTCACGAACCTGATCTTTGCCATACTGACTGACGTCAATTGGCGGCAGCATTTCGACAATCACCAGACCGTTGTGCAGTCGATTAAGATTAATCTTATTCGAAGTTGTAGAGACGCACACGGGAATAATCGGGACGCCCGCCGCAATTGCCGCGTGAAATGCTCCAGTCTTGAACGGTAGCAGGCCGCGACCACGGCTGCGGGTTCCTTCCGGGAACATCCAGATGGAAATACGGCGTTTTTTGAAGTGATTCACTACTTCCGC  >  NC_000913/3162828‑3163097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A