Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,227,107	T→C	S292P (TCC→CCC)	ygjI →	putative transporter YgjI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,227,107	0	T	C	100.0%	266.5 / NA	75	S292P (TCC→CCC)	ygjI	putative transporter YgjI
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (45/30); total (45/30)

TCTCCTCGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAG  >  NC_000913/3226970‑3227242

tctcCTCGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGccc                                                                                                                                       >  2:1234186/1‑140 (MQ=255)

tctcCTCGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGccc                                                                                                                                       >  1:979069/1‑140 (MQ=255)

tctcCTCGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGccc                                                                                                                                       >  1:156818/1‑140 (MQ=255)

tctcCTCGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGGATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTTGGGCTGGTGccc                                                                                                                                       >  2:223452/1‑140 (MQ=255)

 ctcctcGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCt                                                                                                                                      >  1:1131566/1‑140 (MQ=255)

 ctcctcGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCt                                                                                                                                      >  2:1273925/1‑140 (MQ=255)

   cctcGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCttt                                                                                                                                    >  1:868078/1‑140 (MQ=255)

   cctcGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCttt                                                                                                                                    >  1:348369/1‑140 (MQ=255)

   cctcGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCttt                                                                                                                                    >  1:1319944/1‑140 (MQ=255)

   cctcGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGCATTTTGGTCTACCGGAAGCGTTGATGAATCCCTTTGTCGGTCTGGGGGCCttt                                                                                                                                    >  2:995128/1‑140 (MQ=255)

         tGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACcgcg                                                                                                                              <  2:979069/140‑1 (MQ=255)

              aTTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGtt                                                                                                                         >  2:692126/1‑140 (MQ=255)

              aTTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGtt                                                                                                                         >  1:1413370/1‑140 (MQ=255)

              aTTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGtt                                                                                                                         >  1:336660/1‑140 (MQ=255)

                 aaCGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCgg                                                                                                                      <  2:1319944/140‑1 (MQ=255)

                   cGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACcgcg                                                                                                                              <  1:92041/130‑1 (MQ=255)

                   cGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACcgcg                                                                                                                              >  2:92041/1‑130 (MQ=255)

                   cGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGtt                                                                                                                    >  1:1412229/1‑140 (MQ=255)

                   cGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGtt                                                                                                                    <  1:1193827/140‑1 (MQ=255)

                     tCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTcc                                                                                                                  >  1:74275/1‑140 (MQ=255)

                     tCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTcc                                                                                                                  >  2:11988/1‑140 (MQ=255)

                      cTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTccc                                                                                                                 <  2:132739/140‑1 (MQ=255)

                      cTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTccc                                                                                                                 <  2:656394/140‑1 (MQ=255)

                        tCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCTctg                                                                                                               <  2:1131566/140‑1 (MQ=255)

                        tCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCctg                                                                                                               >  1:2639/1‑140 (MQ=255)

                        tCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCctg                                                                                                               >  1:337655/1‑140 (MQ=255)

                        tCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCctg                                                                                                               <  2:69185/140‑1 (MQ=255)

                           tCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCctgctg                                                                                                            <  2:156818/140‑1 (MQ=255)

                             agcagcAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGAt                                                                                                          <  2:69400/140‑1 (MQ=255)

                                            aaaTTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGcc                                                                                           >  2:1363409/1‑140 (MQ=255)

                                                 tACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGa                                                                                      >  1:766265/1‑140 (MQ=255)

                                                              gTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTtctc                                                                         <  1:11988/140‑1 (MQ=255)

                                                                 cAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATG‑GGACCGCAACGCCGGTGAAAATTTTCTTCTCCGaa                                                                     <  1:1273925/140‑1 (MQ=255)

                                                                    gTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAAt                                                                   >  2:117306/1‑140 (MQ=255)

                                                                      aTTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATcc                                                                 >  2:592311/1‑140 (MQ=255)

                                                                         ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                              >  2:1089781/1‑140 (MQ=255)

                                                                         ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                              >  2:117368/1‑140 (MQ=255)

                                                                         ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                              >  1:1112830/1‑140 (MQ=255)

                                                                         ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                              >  2:199521/1‑140 (MQ=255)

                                                                         ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                              <  1:648584/140‑1 (MQ=255)

                                                                         ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                              >  2:738316/1‑140 (MQ=255)

                                                                           aCGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGaa                                                            <  1:281400/140‑1 (MQ=255)

                                                                            cGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAg                                                           >  2:1235427/1‑140 (MQ=255)

                                                                              gCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTAATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAgg                                                          <  1:783076/139‑1 (MQ=255)

                                                                              gCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTAATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAgg                                                          >  2:783076/1‑139 (MQ=255)

                                                                                  ggcggcGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCa                                                        >  2:198135/1‑137 (MQ=255)

                                                                                  ggcggcGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCa                                                        <  1:198135/137‑1 (MQ=255)

                                                                                  ggcggcGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCt                                                     <  1:692126/140‑1 (MQ=255)

                                                                                    cggcgTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCttt                                                   <  2:337655/140‑1 (MQ=255)

                                                                                       cgTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGt                                                >  1:1377534/1‑140 (MQ=255)

                                                                                       cgTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGt                                                >  1:475281/1‑140 (MQ=255)

                                                                                       cgTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGt                                                <  1:894391/140‑1 (MQ=255)

                                                                                         tATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTaa                                              >  1:345376/1‑140 (MQ=255)

                                                                                         tATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTaa                                              >  1:762922/1‑140 (MQ=255)

                                                                                         tATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTaa                                              >  1:1133438/1‑140 (MQ=255)

                                                                                           ttttGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGa                                            <  2:348369/140‑1 (MQ=255)

                                                                                            tttGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGaa                                           >  1:335665/1‑140 (MQ=255)

                                                                                            tttGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTCATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGaa                                           <  1:1234186/140‑1 (MQ=255)

                                                                                                gTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAAcc                                       >  2:1130026/1‑140 (MQ=255)

                                                                                                 tCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCg                                      >  1:933236/1‑140 (MQ=255)

                                                                                                 tCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCg                                      <  2:335665/140‑1 (MQ=255)

                                                                                                  cTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGt                                     <  1:117368/140‑1 (MQ=255)

                                                                                                   tACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTc                                    >  1:699453/1‑140 (MQ=255)

                                                                                                     ccGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGa                                  >  1:261656/1‑140 (MQ=255)

                                                                                                      cGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGaa                                 <  2:1112830/140‑1 (MQ=255)

                                                                                                               tgatgaATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGaa                        >  2:1339560/1‑140 (MQ=255)

                                                                                                               tgatgaATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGaa                        >  2:736285/1‑140 (MQ=255)

                                                                                                               tgatgaATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGaa                        >  1:665904/1‑140 (MQ=255)

                                                                                                               tgatgaATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGaa                        >  1:261615/1‑140 (MQ=255)

                                                                                                               tgatgaATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGa                         >  1:944249/1‑139 (MQ=255)

                                                                                                               tgatgaATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGa                         <  2:944249/139‑1 (MQ=255)

                                                                                                                 atgaATCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGaaaa                      <  2:730411/140‑1 (MQ=255)

                                                                                                                    aaTCGCTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACgg                   >  1:801713/1‑140 (MQ=255)

                                                                                                                         cTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTc              >  2:413835/1‑140 (MQ=255)

                                                                                                                         cTTTGTCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTc              >  2:753823/1‑140 (MQ=255)

                                                                                                                         cTTTGCCGGTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTc              >  1:223250/1‑140 (MQ=255)

                                                                                                                                ggTCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcg       <  2:2639/140‑1 (MQ=255)

                                                                                                                                  tCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcgcg     <  1:117306/140‑1 (MQ=255)

                                                                                                                                  tCTGGTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcgcg     <  1:223452/140‑1 (MQ=255)

                                                                                                                                     ggTGCCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAg  <  1:1363409/140‑1 (MQ=255)

                                                                                                                                      gtgcCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcgcgc    <  1:555690/137‑1 (MQ=255)

TCTCCTCGGTGCTGATTAACGTCTTCGTCAGCAGCAAAGAGTTGAAATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAG  >  NC_000913/3226970‑3227242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A