Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,270,481 T→C noncoding (112/377 nt) rnpB ← RNase P catalytic RNA component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,270,4810TC95.0% 124.8 / ‑1.5 40noncoding (112/377 nt)rnpBRNase P catalytic RNA component
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (8/30);  total (9/31)
Fisher's exact test for biased strand distribution p-value = 4.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.41e-01

CTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTTCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTT  >  NC_000913/3270347‑3270612
                                                                                                                                         |                                                                                                                                    
cTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTTTCTCTTTTTCACTGGTCGTGGGGTTccccc                                                                                                                                 >  2:398900/1‑140 (MQ=255)
  ccGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTcccccccc                                                                                                                               <  2:1334220/140‑1 (MQ=255)
     ggTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCCCTGGTCGTGGGTTCCCCCCCCCgg                                                                                                                            >  1:146181/1‑140 (MQ=255)
        ggAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTTCCCCCCCAGGCGt                                                                                                                         <  1:316442/140‑1 (MQ=255)
         gAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGtt                                                                                                                        <  1:1184883/140‑1 (MQ=255)
              tACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTg                                                                                                                   <  1:656213/140‑1 (MQ=255)
              tACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTg                                                                                                                   <  2:435987/140‑1 (MQ=255)
              acaggTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTg                                                                                                                   <  1:441342/136‑1 (MQ=255)
                 cGTGCCACGGACTGTTGCCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCa                                                                                                                <  2:319730/140‑1 (MQ=255)
                 cGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGCTCCCCCCCCAGGCGTTACCTGGCa                                                                                                                <  2:648585/140‑1 (MQ=255)
                   tGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCAcc                                                                                                              <  2:846566/140‑1 (MQ=255)
                   tGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCAcc                                                                                                              <  1:300383/140‑1 (MQ=255)
                    gCCACGGACTGTTACCAGCCGCGCGGTGTGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGGTTTCTCTCTGTTTCACTTGTCGTGGGGTTCCCCCCCCCGCGGTTCCCCGCAccc                                                                                                             >  1:99589/1‑140 (MQ=255)
                    gCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGTTCTCCTTTGTCCTGGGTCGGGGTTTTCCCCCCCAGCGTTTCCCGGGAccc                                                                                                             >  2:316442/1‑140 (MQ=255)
                      cACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTg                                                                                                           <  2:873110/140‑1 (MQ=255)
                             tGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTTTTTCACTGGTCGTGGGTTCCCCCCCCCGGCGGTACCTGGCACCCCGcccccgt                                                                                                    >  2:441342/1‑136 (MQ=255)
                                       cgcgcgGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTGTTGCACTGGTCGTGGGGTCCCCCCCCCGGCGTTTCCTGGCCCCCCCCCCCATGGAGccccggc                                                                                         >  2:745235/1‑136 (MQ=255)
                                            ggTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTtcc                                                                                    <  1:12566/140‑1 (MQ=255)
                                                       aCCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGcc                                                                         <  1:459187/140‑1 (MQ=255)
                                                        ccGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTTTTGCACTGGTCGTGGGGTCCCCCCCCCGGCGGTACCTGGCACCCCGCCCTATGGAGCCCCGACTTTCCTCcccccccccc                                                                        >  2:131389/1‑140 (MQ=255)
                                                            aCCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTTTCTTCTGCCCTGGCCGTGGGGGCCCCCCCCCCGGCGCTACCTTGCACCCCCCCCTTTGTTGCCCCGGCTTTccccccccccccccccc                                                                     >  2:115565/1‑137 (MQ=255)
                                                               cTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGGTCTCTTTTGCCCTGGTCCGGGGGTCCCCCCCCCCGCGGTACCTCGCGCCCCGCCCCATGGAGGCCCGCCCTTccccccccccccccccccccc                                                                 >  2:1302220/1‑133 (MQ=255)
                                                               cTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTccc                                                                 <  2:1151682/140‑1 (MQ=255)
                                                               cTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTccc                                                                 <  1:413547/140‑1 (MQ=255)
                                                                tttCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTcccc                                                                <  2:581264/140‑1 (MQ=255)
                                                                  tCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCg                                                              <  1:1046055/140‑1 (MQ=255)
                                                                            cTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGgacga                                                    <  2:1328522/140‑1 (MQ=255)
                                                                                tCCCGCTTGCGCGGGCCATCGGTGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGgacgacgac                                                >  1:734710/1‑140 (MQ=255)
                                                                                tCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGgacgacgac                                                <  1:860764/140‑1 (MQ=255)
                                                                                  ccGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTTTTGCACTGGTCGTGGGGTCCCCCCCCCGGCGTTTCCTGGCCCCCCGCCCCATGGAGCCCGGGCTTTCCCCCCCCCCCCCCCCCCCCCCCCCAGAGGAcgacgacga                                              >  2:739286/1‑140 (MQ=255)
                                                                                    gCTTGCGCGGGCCATCGGCGGTTTTTTCTCTTTTTCCCCGGGCCTGGGGTCCCCCCCCCCGCGTTACCCTGCACCCCCCCCCCTTGAGCCCCGCCCTTTCCCCCCCCCCCCCCGCCCCCCCCCAGAGgacgacgacccaa                                            >  2:669086/1‑136 (MQ=255)
                                                                                    gCTTGCGCGGGCCATCGGCGGTTTTTTCTCTTTTGCACCGGTCGTGGGGTCCCCCCCCCCGCGGTACCCGGCACCCCGCCCTCTTGAGCCCGGGCTTTCCTCCCCCCCCCCCCCCTCCCCCCAAGAGGgcgccgacggaa                                            >  2:723625/1‑137 (MQ=255)
                                                                                    gCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAg                                            <  1:754500/140‑1 (MQ=255)
                                                                                     cTTGCGCGGGCCATCGGCGGTTTTCTCTCTGTTGCACTGGTCGTGGGGTTCCCCCCCCCGCGGTTCCCGGCACCCCGCCCCATGGGGCCCGGGCTTTCCTCCCCCCCCCCCCCCTCCCCCCCAGAGGACGCCGGCGaaac                                           >  2:848575/1‑138 (MQ=255)
                                                                                      ttGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGGTCCCCCCCCCGGCGGTACCTGGCACCCCGCCCCATGGAGCCCGGGCTTTCCTCCCCTCCCCCCCCCTCCCCCCCAGAGGGCGACGACGAAgcg                                          >  2:754500/1‑140 (MQ=255)
                                                                                         cgcgGGCCATCGGCGGTTTTCTCTCTTTTTCACTGGGCGGGGGGTCCCCCCCCCGGCGGTACCTGGGACCCCCCCCCATGGAGCCCGGGCTTTCCTCCCCCCCCCCCCTCTCCCCCCCAGAGGGGGACGACGAAgcggcg                                       >  2:274094/1‑140 (MQ=255)
                                                                                         cgcgGGCCATCGGCGGTTTTCTCTCTGTTGCACTGGTCGTGGGGTCCCCCCCCCGGCGGTACCCGGCACCCCGCCCCATGGAGCCCCGCCTTTCCTCCCCCCCCCCCCCCTCCCCCCCACAGGGCCACGCCGAAgcggcg                                       >  2:1357623/1‑140 (MQ=255)
                                                                                              gCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGt                                  <  1:739286/140‑1 (MQ=255)
                                                                                                    ggcggTTTGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTc                            <  1:1183980/140‑1 (MQ=255)
                                                                                                           tGCTCTCTGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCg                     <  1:274094/140‑1 (MQ=255)
                                                                                                             ctctctGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgc                   <  2:137476/140‑1 (MQ=255)
                                                                                                              tctctGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcg                  <  1:658323/140‑1 (MQ=255)
                                                                                                              tctctGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcg                  <  2:1078767/140‑1 (MQ=255)
                                                                                                                tctGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcg                <  1:1302220/140‑1 (MQ=255)
                                                                                                                tctGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcg                <  2:833327/140‑1 (MQ=255)
                                                                                                                 ctGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcgc               <  1:131389/140‑1 (MQ=255)
                                                                                                                 ctGTTGCACCGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcgc               <  2:258365/140‑1 (MQ=255)
                                                                                                                  tGTTGCACTGGTCGTGGGTTCCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcgc               <  1:115565/140‑1 (MQ=255)
                                                                                                                  tGTTGCACTGGTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCa              <  2:99589/140‑1 (MQ=255)
                                                                                                                             gTCGTGGGTTTCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAggg    >  2:770280/1‑140 (MQ=255)
                                                                                                                             gTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAggg    >  2:67518/1‑140 (MQ=255)
                                                                                                                             gTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAggg    >  2:839022/1‑140 (MQ=255)
                                                                                                                             gTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAggg    >  2:1101078/1‑140 (MQ=255)
                                                                                                                             gTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAggg    >  1:1234960/1‑140 (MQ=255)
                                                                                                                             gTCGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAggg    >  2:975037/1‑140 (MQ=255)
                                                                                                                               cGTGGGTTCCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGtt  >  1:207671/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                    
CTCCGGGTGGAGTTTACCGTGCCACGGACTGTTACCAGCCGCGCGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTGCACTGGTCGTGGGTTTCCCCCCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTT  >  NC_000913/3270347‑3270612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

N/A