Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,305,273 T→C N182S (AAC→AGC)  mtr ← tryptophan:H(+) symporter Mtr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,305,2730TC100.0% 458.9 / NA 125N182S (AAC→AGC) mtrtryptophan:H(+) symporter Mtr
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (59/66);  total (59/66)

Only 100 of 126 total aligned reads displayed.

TTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAG  >  NC_000913/3305138‑3305409
                                                                                                                                       |                                                                                                                                        
ttCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGaa                                                                                                                                      >  2:679370/1‑140 (MQ=255)
 tCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAAc                                                                                                                                     >  2:475404/1‑140 (MQ=255)
  cACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACa                                                                                                                                    <  1:31498/140‑1 (MQ=255)
  cACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACa                                                                                                                                    <  2:334553/140‑1 (MQ=255)
   aCGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACaa                                                                                                                                   >  2:1186054/1‑140 (MQ=255)
   aCGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACaa                                                                                                                                   >  1:294427/1‑140 (MQ=255)
       tGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTc                                                                                                                               >  1:359805/1‑140 (MQ=255)
          ttttCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCa                                                                                                                            >  1:517173/1‑140 (MQ=255)
            ttCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAgg                                                                                                                          >  2:1006593/1‑140 (MQ=255)
               ggATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGGCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTg                                                                                                                       >  2:681551/1‑140 (MQ=255)
                     ttGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATg                                                                                                                 <  2:132495/140‑1 (MQ=255)
                      tgcggTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGc                                                                                                                >  2:1289861/5‑140 (MQ=255)
                        ccGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGccc                                                                                                              <  2:40174/140‑1 (MQ=255)
                           tAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCcag                                                                                                           <  2:1156307/140‑1 (MQ=255)
                           tAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCcag                                                                                                           <  2:1125769/140‑1 (MQ=255)
                           tAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCcag                                                                                                           <  2:107538/140‑1 (MQ=255)
                              tACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCcagcag                                                                                                        <  1:1333490/140‑1 (MQ=255)
                                  tcatcaGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTa                                                                                                    >  2:572550/1‑140 (MQ=255)
                                    atcaGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTAcc                                                                                                  <  2:885045/140‑1 (MQ=255)
                                      caGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAgg                                                                                                       >  1:707010/1‑133 (MQ=255)
                                      caGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCaa                                                                                                <  2:517173/140‑1 (MQ=255)
                                      caGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCaa                                                                                                <  1:625566/140‑1 (MQ=255)
                                        ggCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTAc                                                                                                   >  1:1388276/1‑135 (MQ=255)
                                        ggCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTAc                                                                                                   >  1:670175/1‑135 (MQ=255)
                                        ggCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAg                                                                                              <  1:531020/140‑1 (MQ=255)
                                        ggCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCCGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAg                                                                                              >  2:1135375/1‑140 (MQ=255)
                                         gCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAgg                                                                                             >  1:1293572/1‑140 (MQ=255)
                                          cTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGt                                                                                            <  1:772174/140‑1 (MQ=255)
                                           ttGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTg                                                                                           >  1:427982/1‑140 (MQ=255)
                                             ggCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAg                                                                                         >  2:514292/1‑140 (MQ=255)
                                             ggCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAg                                                                                         >  1:166191/1‑140 (MQ=255)
                                             ggCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAg                                                                                         >  1:1244471/1‑140 (MQ=255)
                                              gCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAgg                                                                                        <  2:1344283/140‑1 (MQ=255)
                                               cACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGga                                                                                       <  2:625659/140‑1 (MQ=255)
                                                 cGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGgaag                                                                                     <  2:1175728/140‑1 (MQ=255)
                                                  gTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGgaaga                                                                                    >  2:680716/1‑140 (MQ=255)
                                                   ttACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGgaagaa                                                                                   >  1:637700/1‑140 (MQ=255)
                                                   ttACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGgaagaa                                                                                   >  1:372101/1‑140 (MQ=255)
                                                        gTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTaa                                                                              <  2:911917/140‑1 (MQ=255)
                                                         tGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAAt                                                                             <  2:294427/140‑1 (MQ=255)
                                                           aTAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGa                                                                           >  1:1366020/1‑140 (MQ=255)
                                                              aCCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACtt                                                                        >  1:597851/1‑140 (MQ=255)
                                                              aCCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACtt                                                                        >  1:820801/1‑140 (MQ=255)
                                                                 aaaCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCg                                                                     <  1:1289861/140‑1 (MQ=255)
                                                                   aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGa                                                                           <  2:1126052/132‑1 (MQ=255)
                                                                   aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGa                                                                           >  1:1126052/1‑132 (MQ=255)
                                                                   aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGcc                                                                   <  2:1366020/140‑1 (MQ=255)
                                                                   aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGcc                                                                   <  2:359805/140‑1 (MQ=255)
                                                                   aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGcc                                                                   <  2:637700/140‑1 (MQ=255)
                                                                   aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGcc                                                                   <  1:560812/140‑1 (MQ=255)
                                                                   aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGcc                                                                   <  1:1282528/140‑1 (MQ=255)
                                                                       tGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCa                                                               >  2:819367/1‑140 (MQ=255)
                                                                        gCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAg                                                              <  2:721765/140‑1 (MQ=255)
                                                                        gCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAg                                                              >  1:623015/1‑140 (MQ=255)
                                                                             acagaACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACaa                                                         <  2:434687/140‑1 (MQ=255)
                                                                             acagaACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACaa                                                         <  1:1212850/140‑1 (MQ=255)
                                                                               agaACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATc                                                       <  2:817372/140‑1 (MQ=255)
                                                                                gaACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCg                                                      <  1:680716/140‑1 (MQ=255)
                                                                                gaACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCg                                                      <  2:477498/140‑1 (MQ=255)
                                                                                 aaCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGc                                                     >  1:811993/1‑140 (MQ=255)
                                                                                 aaCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGc                                                     >  2:338815/1‑140 (MQ=255)
                                                                                 aaCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGGGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGc                                                     >  2:143177/1‑140 (MQ=255)
                                                                                  aCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCt                                                    <  2:427982/140‑1 (MQ=255)
                                                                                           tcatcaACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGc                                                     >  1:384790/1‑130 (MQ=255)
                                                                                           tcatcaACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGa                                           >  1:743923/1‑140 (MQ=255)
                                                                                             atcaACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACt                                         <  1:953483/140‑1 (MQ=255)
                                                                                             atcaACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACt                                         <  2:344097/140‑1 (MQ=255)
                                                                                                aaCAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGAc                                      >  2:385660/1‑140 (MQ=255)
                                                                                                 aCAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACg                                     <  2:1034438/140‑1 (MQ=255)
                                                                                                    gATACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCt                                  >  1:471168/1‑140 (MQ=255)
                                                                                                     aTACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCtt                                 >  2:1035472/1‑140 (MQ=255)
                                                                                                     aTACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCtt                                 <  2:170811/140‑1 (MQ=255)
                                                                                                     aTACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCtt                                 <  2:597851/140‑1 (MQ=255)
                                                                                                      tACGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCttt                                <  2:1403215/140‑1 (MQ=255)
                                                                                                       aCGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTa                               >  1:157942/1‑140 (MQ=255)
                                                                                                        cGGTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAg                              <  1:385660/140‑1 (MQ=255)
                                                                                                         ggTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGt                             >  2:752178/1‑140 (MQ=255)
                                                                                                          gTGCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTg                            <  2:166191/140‑1 (MQ=255)
                                                                                                            gCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTATCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCtt                                 >  1:299167/1‑133 (MQ=255)
                                                                                                            gCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTATCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCtt                                 <  2:299167/133‑1 (MQ=255)
                                                                                                            gCATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCt                          <  1:819367/140‑1 (MQ=255)
                                                                                                             cATAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTc                         >  1:1019320/1‑140 (MQ=255)
                                                                                                              aTAAGACGCATTGCTTTCGGCGACGCTTAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCa                        >  1:1010353/1‑140 (MQ=255)
                                                                                                               tAAGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCaa                       >  2:949260/1‑140 (MQ=255)
                                                                                                                aaGACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAac                      <  1:95051/140‑1 (MQ=255)
                                                                                                                  gACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAg                              >  2:1013384/1‑130 (MQ=255)
                                                                                                                  gACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAg                              <  1:1013384/130‑1 (MQ=255)
                                                                                                                  gACGCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAacca                    <  1:1200505/140‑1 (MQ=255)
                                                                                                                     gCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAaccacac                 >  1:700862/1‑140 (MQ=255)
                                                                                                                     gCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAaccacac                 >  1:677436/1‑140 (MQ=255)
                                                                                                                     gCATTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAaccacac                 >  1:120071/1‑140 (MQ=255)
                                                                                                                       aTTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCt                          <  2:371103/129‑1 (MQ=255)
                                                                                                                       aTTGCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAaccacacca               >  1:728178/1‑140 (MQ=255)
                                                                                                                          gCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACaa            >  1:1155948/1‑140 (MQ=255)
                                                                                                                          gCTTTCGGCGACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACaa            <  1:1035472/140‑1 (MQ=255)
                                                                                                                                   gACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCa   >  2:694164/1‑140 (MQ=255)
                                                                                                                                   gACGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCG‑CCCCAACACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAg  >  1:1029839/1‑140 (MQ=255)
                                                                                                                                    aCGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAg  <  2:1323087/140‑1 (MQ=255)
                                                                                                                                    aCGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAg  <  2:1196323/140‑1 (MQ=255)
                                                                                                                                    aCGCTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAg  <  1:1105726/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAG  >  NC_000913/3305138‑3305409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A