Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,393,568 A→G G897G (GGT→GGC)  yhdP ← AsmA2 domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,393,5680AG100.0% 273.1 / NA 75G897G (GGT→GGC) yhdPAsmA2 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (48/27);  total (48/27)

TTTCACGCCCTTGCGCTTCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTGCCGCCCAAATAGCA  >  NC_000913/3393432‑3393700
                                                                                                                                        |                                                                                                                                    
tttCACGCCCTTGCGCTTCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCAccgccg                                                                                                                                   <  1:980006/140‑1 (MQ=255)
    aCGCCCTTGCGCTTCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGacac                                                                                                                               >  2:1361723/1‑140 (MQ=255)
            gcgcTTCAACCAGGGTGCCATTTGCCGTTGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCa                                                                                                                       >  1:65300/1‑140 (MQ=255)
             cgcTTCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCTCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAg                                                                                                                      <  2:984067/140‑1 (MQ=255)
                ttCACCCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAgcgc                                                                                                                   <  2:564407/140‑1 (MQ=255)
                ttCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAgcgc                                                                                                                   <  2:1178813/140‑1 (MQ=255)
                ttCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAgcgc                                                                                                                   <  2:1104290/140‑1 (MQ=255)
                ttCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAgcgc                                                                                                                   >  2:892423/1‑140 (MQ=255)
                ttCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAgcgc                                                                                                                   <  2:678926/140‑1 (MQ=255)
                  cAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCt                                                                                                                 >  1:242402/1‑140 (MQ=255)
                  cAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGAACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCt                                                                                                                 >  1:1031633/1‑140 (MQ=255)
                     ccAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTc                                                                                                              <  2:24017/140‑1 (MQ=255)
                          gTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTTTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCTTTTCCggcg                                                                                                         <  2:1142426/140‑3 (MQ=255)
                          gTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGaa                                                                                                         <  1:892423/140‑1 (MQ=255)
                              cATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAgg                                                                                                     >  2:936205/1‑140 (MQ=255)
                                   gCCGTTGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGgccag                                                                                                <  2:65300/140‑1 (MQ=255)
                                   gCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGgccag                                                                                                >  2:111130/1‑140 (MQ=255)
                                   gCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGgccag                                                                                                <  1:982514/140‑1 (MQ=255)
                                       tCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCAc                                                                                            >  1:572800/1‑140 (MQ=255)
                                        cGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACt                                                                                           <  2:519995/140‑1 (MQ=255)
                                           ttGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCgg                                                                                        <  2:242402/140‑1 (MQ=255)
                                              cGAAACAATTCTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGctc                                                                                     <  1:510764/140‑3 (MQ=255)
                                                 aaCAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCAt                                                                                  >  1:701770/1‑140 (MQ=255)
                                                     aTACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCAt                                                                              <  2:1267868/140‑1 (MQ=255)
                                                       cttctggTTATTCCATTGGTTGTTCCCCGTTGACAACATAGCGGTGCGTATCGTTATGTGTTGTGGGAACCTGGTTGCACCGCCGACTCTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATcg                                                                            <  2:1031633/135‑1 (MQ=255)
                                                          cAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATcggcg                                                                         <  1:402926/140‑1 (MQ=255)
                                                          cAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATcggcg                                                                         <  1:127705/140‑1 (MQ=255)
                                                             gTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCggcggc                                                                       <  1:86619/139‑1 (MQ=255)
                                                             gTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCggcggc                                                                       >  2:86619/1‑139 (MQ=255)
                                                             gTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCa                                                                      >  2:1217861/1‑140 (MQ=255)
                                                                aTTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCatat                                                                   >  1:471432/1‑140 (MQ=255)
                                                                aTTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCatat                                                                   >  2:1014729/1‑140 (MQ=255)
                                                                 ttCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATAtt                                                                  >  1:768008/1‑140 (MQ=255)
                                                                      ttGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGtt                                                             >  2:789282/1‑140 (MQ=255)
                                                                       tGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTc                                                            >  2:115739/1‑140 (MQ=255)
                                                                       tGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTc                                                            >  2:308091/1‑140 (MQ=255)
                                                                       tGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTc                                                            >  2:887154/1‑140 (MQ=255)
                                                                       tGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTc                                                            >  1:1145241/1‑140 (MQ=255)
                                                                       tGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTc                                                            >  1:1297542/1‑140 (MQ=255)
                                                                       tGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTc                                                            >  1:63891/1‑140 (MQ=255)
                                                                           gATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACg                                                        >  1:211062/1‑140 (MQ=255)
                                                                            aTTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGc                                                       >  1:31583/1‑140 (MQ=255)
                                                                            aTTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGc                                                       >  1:288721/1‑140 (MQ=255)
                                                                                cccAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACt                                                   >  2:1291856/1‑140 (MQ=255)
                                                                                   aGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGTGGCATATTGAGTTCAACGCCACTTTg                                                >  1:1330543/1‑140 (MQ=255)
                                                                                      gACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTc                                             >  2:271235/1‑140 (MQ=255)
                                                                                      gACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTc                                             >  2:184777/1‑140 (MQ=255)
                                                                                        caacaTAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCg                                           >  2:231328/1‑140 (MQ=255)
                                                                                         aacaTAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCgg                                          >  2:505515/1‑140 (MQ=255)
                                                                                           caTAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCa                                        >  2:651786/1‑140 (MQ=255)
                                                                                               ggCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAAcgg                                    >  1:1354079/1‑140 (MQ=255)
                                                                                               ggCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAAcgg                                    >  2:507692/1‑140 (MQ=255)
                                                                                                gCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAAcggc                                   >  1:34847/1‑140 (MQ=255)
                                                                                                  gtacgtaACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAAcggcgg                                 <  1:505515/140‑1 (MQ=255)
                                                                                                   tacgtaACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCggg                                >  2:1028122/1‑140 (MQ=255)
                                                                                                   tacgtaACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCggg                                >  2:895109/1‑140 (MQ=255)
                                                                                                     cgtaACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAAcggcgg                                 >  1:389234/1‑137 (MQ=255)
                                                                                                     cgtaACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAAcggcgg                                 <  2:389234/137‑1 (MQ=255)
                                                                                                     cgtaACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCggggg                              >  1:1193455/1‑138 (MQ=255)
                                                                                                     cgtaACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAg                              >  1:1402896/1‑140 (MQ=255)
                                                                                                     cgtaACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAg                              >  1:948480/1‑140 (MQ=255)
                                                                                                      gtaACGTTATGGGTTGTGGGAAACTCGCTGCCCCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGc                             <  1:1398475/140‑1 (MQ=255)
                                                                                                       taACGTTATGTGTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCg                            <  2:471432/140‑1 (MQ=255)
                                                                                                        aaCGTTATGTGTTGTGGGAAACTCGCTGCTCCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCga                           >  1:569444/1‑139 (MQ=255)
                                                                                                               tgtgTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGGTTTTCtt                    >  1:780289/1‑139 (MQ=255)
                                                                                                               tgtgTTGTGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGGTTTACtt                    >  2:748850/1‑139 (MQ=255)
                                                                                                                  gttgtGGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCt                 <  1:1291856/140‑1 (MQ=255)
                                                                                                                    tgtgGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGGGGTTTTCTGTCTgc               >  2:1285766/1‑140 (MQ=255)
                                                                                                                    tgtgGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGGGTTTCTGTCTgc               >  2:315230/1‑140 (MQ=255)
                                                                                                                      tgGGAACCTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTgccg             <  2:319849/140‑1 (MQ=255)
                                                                                                                      tgGGAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGGGCGGTTTACTTTTTgccc             >  2:1011772/1‑139 (MQ=255)
                                                                                                                       gggAACCTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTgccgc            <  2:634616/140‑1 (MQ=255)
                                                                                                                       gggAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTgccgc            <  2:1077809/140‑1 (MQ=255)
                                                                                                                       gggAAACTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTgccgc            <  2:701770/140‑1 (MQ=255)
                                                                                                                          aaaCTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTGCCGCCCa         <  1:308091/140‑1 (MQ=255)
                                                                                                                             cTCGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTGCCGCCCAAAt      >  2:72184/1‑140 (MQ=255)
                                                                                                                               cGCTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGGTTTTCTGTCTGCCGCCCcaaaaa    >  1:1262171/1‑137 (MQ=255)
                                                                                                                                 cTGCACCGCCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTGCCGCCCAAATAGCa  <  1:271235/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
TTTCACGCCCTTGCGCTTCAACCAGGGTGCCATTTGCCGTCGGTTGCGAAACAATACTCAGGTTATTCCATTGCTGATTTCCCAGTGACAACATAGGCGTACGTAACGTTATGTGTTGTGGGAAACTCGCTGCACCACCGACACTCTCCGCAGCGCCTTTCTGGAACAGGGCCAGCCACTCGGCACCATTCATCGGCGGCATATTGAGTTCAACGCCACTTTGTTCCGGCAACGGCGGGAGCGTTTTACTGTCTGCCGCCCAAATAGCA  >  NC_000913/3393432‑3393700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A