Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,402,245 A→G V363A (GTA→GCA)  csrD ← regulator of CsrB and CsrC decay

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,402,2450AG100.0% 240.7 / NA 68V363A (GTA→GCA) csrDregulator of CsrB and CsrC decay
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (30/38);  total (30/38)

ACTGAGCATTTGCTCGATAAGCGTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCC  >  NC_000913/3402109‑3402373
                                                                                                                                        |                                                                                                                                
aCTGAGCATTTGCTCGATAAGCGTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCt                                                                                                                               <  2:599006/140‑1 (MQ=255)
 cTGAGCATTTGCTCGATAAGCGTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTg                                                                                                                              >  1:736426/1‑140 (MQ=255)
           gCTCGATAAGCGTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATcc                                                                                                                    >  1:1010417/1‑140 (MQ=255)
           gCTCGATAAGCGTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATcc                                                                                                                    >  2:141613/1‑140 (MQ=255)
            cTCGATAAGCGTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCt                                                                                                                   <  2:759347/140‑1 (MQ=255)
                     cGTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTAc                                                                                                          >  2:1331341/1‑140 (MQ=255)
                      gTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACg                                                                                                         >  2:580105/1‑140 (MQ=255)
                       tACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGc                                                                                                        >  2:995107/1‑140 (MQ=255)
                          gCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAg                                                                                                     <  2:142782/140‑1 (MQ=255)
                             aGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGgcg                                                                                                  <  1:1334785/140‑1 (MQ=255)
                             aGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGgcg                                                                                                  <  2:1291417/140‑1 (MQ=255)
                              gCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGgcgc                                                                                                 <  2:1010417/140‑1 (MQ=255)
                              gCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGgcgc                                                                                                 <  1:1294526/140‑1 (MQ=255)
                              gCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGgcgc                                                                                                 <  1:580105/140‑1 (MQ=255)
                               cGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGTCGCa                                                                                                >  2:615978/1‑140 (MQ=255)
                               cGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCa                                                                                                >  2:788704/1‑140 (MQ=255)
                                 aaCATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGa                                                                                              <  1:1326572/140‑1 (MQ=255)
                                   cATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATa                                                                                            <  1:1219501/140‑1 (MQ=255)
                                   cATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATa                                                                                            <  1:425897/140‑1 (MQ=255)
                                    aTTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATAc                                                                                           <  1:1001386/140‑1 (MQ=255)
                                    aTTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATAc                                                                                           <  2:1395401/140‑1 (MQ=255)
                                        ccGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAAt                                                                                       <  2:842256/140‑1 (MQ=255)
                                          gcgTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAAtgt                                                                                     <  2:192860/140‑1 (MQ=255)
                                           cgTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCa                                                                                                <  1:495069/128‑1 (MQ=255)
                                           cgTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCa                                                                                                >  2:495069/1‑128 (MQ=255)
                                           cgTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAAtgtg                                                                                    <  1:741281/140‑1 (MQ=255)
                                             tCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGa                                                                                  >  1:777480/1‑140 (MQ=255)
                                             tCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGa                                                                                  >  2:850341/1‑140 (MQ=255)
                                              ccTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATAc                                                                                           <  2:185248/130‑1 (MQ=255)
                                              ccTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATAc                                                                                           >  1:185248/1‑130 (MQ=255)
                                                             gAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATc                                                                  <  2:1072929/140‑1 (MQ=255)
                                                             gAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATc                                                                  <  1:79068/140‑1 (MQ=255)
                                                             gAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACAAATGTGGATCATATCGTCGCGATc                                                                  <  1:788704/140‑1 (MQ=255)
                                                               gTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGa                                                                <  2:786802/140‑1 (MQ=255)
                                                                  aTCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCa                                                             >  2:672752/1‑140 (MQ=255)
                                                                   tCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGa                                                                <  1:575742/136‑1 (MQ=255)
                                                                   tCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGa                                                                >  2:575742/1‑136 (MQ=255)
                                                                      tAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCAtttt                                                         >  1:1364800/1‑140 (MQ=255)
                                                                       aaaTAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTa                                                        <  2:1364800/140‑1 (MQ=255)
                                                                        aaTAGCCCAGCTATTGCCGCCCTGCAACCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTAt                                                       >  1:1140300/1‑140 (MQ=255)
                                                                          tAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTg                                                     <  1:141613/140‑1 (MQ=255)
                                                                             cccAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGa                                                                    <  1:142928/122‑1 (MQ=255)
                                                                             cccAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGa                                                                    >  2:142928/1‑122 (MQ=255)
                                                                             cccAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTc                                                  >  1:677729/1‑140 (MQ=255)
                                                                             cccAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTc                                                  >  2:348374/1‑140 (MQ=255)
                                                                              ccAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATc                                                                  <  1:1438137/123‑1 (MQ=255)
                                                                              ccAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATc                                                                  >  2:1438137/1‑123 (MQ=255)
                                                                               cAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCgg                                                <  1:850341/140‑1 (MQ=255)
                                                                                aGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGc                                               <  1:348374/140‑1 (MQ=255)
                                                                                          gccCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCaa                                     <  2:736426/140‑1 (MQ=255)
                                                                                            ccTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGATCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACg                                   >  2:74319/1‑140 (MQ=255)
                                                                                            ccTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACg                                   >  2:400675/1‑140 (MQ=255)
                                                                                               gCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCt                                <  1:1261944/140‑1 (MQ=255)
                                                                                                cAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCtt                               >  2:700889/1‑140 (MQ=255)
                                                                                                        cATTACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAAc                       >  1:320611/1‑140 (MQ=255)
                                                                                                          ttACGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTg                     >  2:102927/1‑140 (MQ=255)
                                                                                                            aCGCGTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGAc                   >  2:1046563/1‑140 (MQ=255)
                                                                                                             cgcgTGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGAcc                  >  1:850547/1‑140 (MQ=255)
                                                                                                              gcgTGGCAGATTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGAGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATAAACGGCTTTGATTAACTGACCg                 <  1:615978/140‑1 (MQ=255)
                                                                                                                 tGGCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCg              <  1:995107/140‑1 (MQ=255)
                                                                                                                  ggCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATCAACTGACCGGCGa             >  2:161332/1‑140 (MQ=255)
                                                                                                                   gCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGATCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGAt            <  1:74319/140‑1 (MQ=255)
                                                                                                                   gCAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGAt            <  1:400675/140‑1 (MQ=255)
                                                                                                                    cAGACTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATg           <  2:777480/140‑1 (MQ=255)
                                                                                                                       aCTCTGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGctc        >  1:1172104/1‑140 (MQ=255)
                                                                                                                         tctGCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGctctc      >  2:1465017/1‑140 (MQ=255)
                                                                                                                            gCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGc   <  1:672752/140‑1 (MQ=255)
                                                                                                                            gCATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGc   <  1:1465017/140‑1 (MQ=255)
                                                                                                                             cATGTTCCATTGCCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGcc  >  1:838168/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                
ACTGAGCATTTGCTCGATAAGCGTACGCCAGCGAACATTACCGCGTCCTTTTTCAGGCAACGAGTCATCGTAAATAGCCCAGCTATTGCCGCCCTGCAATCCCGCATTACGCGTGGCAGACTCTGCATGTTCCATTACCTGCTCGGTATCCTGACCACTACGCCAGGCGCAGATACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCC  >  NC_000913/3402109‑3402373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A