Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
191 |
83.5 |
2830284 |
99.3% |
2810472 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,659,012 |
T→C |
noncoding (21/91 nt) |
gadF → |
small regulatory RNA GadF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,659,012 | 0 | T | C | 99.2%
| 446.2
/ ‑6.4
| 122 | noncoding (21/91 nt) | gadF | small regulatory RNA GadF |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (63/58); total (64/58) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 122 total aligned reads displayed.
TCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGACAACC > NC_000913/3658877‑3659141
|
tCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATcc < 1:1149124/140‑1 (MQ=255)
cacaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATcca > 1:1029173/1‑140 (MQ=255)
cacaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATcca < 2:124842/140‑1 (MQ=255)
cacaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATcca > 2:1326603/1‑140 (MQ=255)
acaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATccac > 1:205796/1‑140 (MQ=255)
acaTCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATccac > 1:361502/1‑140 (MQ=255)
tCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATccac > 2:1332213/1‑137 (MQ=255)
tCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATccac < 1:1332213/137‑1 (MQ=255)
cTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGt > 1:304297/1‑140 (MQ=255)
tATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAg > 1:1129102/1‑140 (MQ=255)
ttttAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCTCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAAc < 2:1284198/140‑1 (MQ=255)
tAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCt > 2:993535/1‑140 (MQ=255)
aGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCtt > 1:830146/1‑140 (MQ=255)
gTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTc > 1:710634/1‑140 (MQ=255)
gTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTc > 1:18295/1‑140 (MQ=255)
tCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCg < 2:962010/140‑1 (MQ=255)
tCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCg < 2:42253/140‑1 (MQ=255)
tAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGa < 1:1044535/140‑1 (MQ=255)
aaGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGaa > 2:1047856/1‑140 (MQ=255)
aCTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATg > 1:339017/1‑137 (MQ=255)
aCTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATg < 2:339017/137‑1 (MQ=255)
aCTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTg > 2:868423/1‑140 (MQ=255)
aCTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTg > 2:1033041/1‑140 (MQ=255)
aCTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTg > 2:844982/1‑140 (MQ=255)
cTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTgg > 2:1052235/1‑140 (MQ=255)
gAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCa > 1:594195/1‑140 (MQ=255)
gAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCa > 1:1363301/1‑140 (MQ=255)
aaaTTGATGGTTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAg < 1:661216/140‑1 (MQ=255)
aaaTTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAg < 2:1029173/140‑1 (MQ=255)
aaaTTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAg < 2:805234/140‑1 (MQ=255)
ttGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGaa > 2:826112/1‑140 (MQ=255)
ttGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGaa < 1:805926/140‑1 (MQ=255)
ttGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGaa < 1:826112/140‑1 (MQ=255)
gATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACt < 2:594195/140‑1 (MQ=255)
ctggcATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTgg > 2:476987/1‑140 (MQ=255)
ctggcATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTgg > 1:696693/1‑140 (MQ=255)
gcATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAg > 1:86539/1‑140 (MQ=255)
gcATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAg > 1:1099321/1‑140 (MQ=255)
gcATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAg > 1:839525/1‑140 (MQ=255)
tGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAAc > 1:1341127/1‑140 (MQ=255)
aGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCaa > 1:205904/1‑140 (MQ=255)
gggATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAAc < 2:656489/140‑1 (MQ=255)
ggATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACa > 2:1057469/1‑140 (MQ=255)
aTGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑tt < 1:1052235/140‑1 (MQ=255)
gCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGt > 2:1186522/1‑140 (MQ=255)
gCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGt > 1:1372762/1‑140 (MQ=255)
cTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTc > 1:689417/1‑140 (MQ=255)
tGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCg < 2:710634/140‑1 (MQ=255)
gATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGt < 2:717679/140‑1 (MQ=255)
gATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGt < 1:868423/140‑1 (MQ=255)
ttCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGa < 2:138156/140‑1 (MQ=255)
ttCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGa < 2:836834/140‑1 (MQ=255)
tCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGAc < 2:361502/140‑1 (MQ=255)
tACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCa < 2:1270341/140‑1 (MQ=255)
tACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCa > 2:938469/1‑140 (MQ=255)
cccccGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCAcc < 1:476987/140‑1 (MQ=255)
ccGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATg < 2:667776/140‑1 (MQ=255)
ccGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATg > 1:628670/1‑140 (MQ=255)
ggTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTc < 1:1191157/140‑1 (MQ=255)
ggTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTc > 2:775324/1‑140 (MQ=255)
tGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACATTTTTTTTTTGTCGTTGACCTCACCATGTc > 2:51213/1‑140 (MQ=255)
tACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCAc > 1:1273863/1‑140 (MQ=255)
aCTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACt < 2:696693/140‑1 (MQ=255)
aCTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACt < 1:567129/140‑1 (MQ=255)
cTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACtg < 2:1381482/140‑1 (MQ=255)
cTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACtg < 2:830146/140‑1 (MQ=255)
aaGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACAGTGc > 2:949694/1‑140 (MQ=255)
aGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGcc < 2:689417/140‑1 (MQ=255)
aGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGcc < 2:45130/140‑1 (MQ=255)
ggAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCt < 1:1033041/140‑1 (MQ=255)
ggAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCt < 1:844982/140‑1 (MQ=255)
gagaGGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTg > 2:132593/1‑140 (MQ=255)
gagGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACAT‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGt > 2:536925/1‑140 (MQ=255)
gagGCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTa < 1:993535/140‑1 (MQ=255)
gagGCTAAAACGACTTTATTCCCCTGGTATGTACATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTa > 1:131921/1‑140 (MQ=255)
ggCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCt < 1:479699/135‑1 (MQ=255)
ggCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCt > 2:479699/1‑135 (MQ=255)
gCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATcc > 1:1304319/1‑140 (MQ=255)
gCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATcc > 2:580648/1‑140 (MQ=255)
gCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATcc > 2:1371614/1‑140 (MQ=255)
gCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATcc > 2:210161/1‑140 (MQ=255)
gCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATcc > 1:23679/1‑140 (MQ=255)
gCTAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATcc > 1:30168/1‑140 (MQ=255)
tAAAACGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCa > 1:271520/1‑140 (MQ=255)
cGACTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGTAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTa < 2:619938/140‑1 (MQ=255)
cGACTTTATTCCCCTGATATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTa < 1:685409/140‑1 (MQ=255)
cTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTg > 1:1123498/1‑140 (MQ=255)
cTTTATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTg > 1:613137/1‑140 (MQ=255)
tATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCt < 2:86539/140‑1 (MQ=255)
tATTCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCt < 2:1099321/140‑1 (MQ=255)
ttCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGa < 2:30168/140‑1 (MQ=255)
ttCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGa < 1:132593/140‑1 (MQ=255)
ttCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGa < 2:1372762/140‑1 (MQ=255)
ttCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGa < 1:1047856/140‑1 (MQ=255)
tCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGAc < 1:507386/140‑1 (MQ=255)
tCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGAc < 1:580648/140‑1 (MQ=255)
tCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGAc < 2:839525/140‑1 (MQ=255)
tCCCCTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGAc < 1:1371614/140‑1 (MQ=255)
cTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGACAAcc < 1:775324/140‑1 (MQ=255)
cTGGTATGTGCATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGACAAcc < 1:831018/140‑1 (MQ=255)
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TCACATCTTATTTTTAGTCAGGACATAAGCAACTGAAATTGATGGCTGGCATGACGAGGGATGCAGATGCTGATTTCATTACCCCCGGTGATTACTAAAGGAGAGGCTAAAACGACTTTATTCCCCTGGTATGTGTATCCACCAGTAGAACCCTTCGTTGCCCGAATGCTGGCAGGAACTGTTGGCAGAACGGCAACA‑‑TTTTTTTTGTCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGACAACC > NC_000913/3658877‑3659141
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
