Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,660,338 A→G A369A (GCA→GCG)  mdtE → multidrug efflux pump membrane fusion protein MdtE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,660,3380AG100.0% 244.1 / NA 68A369A (GCA→GCG) mdtEmultidrug efflux pump membrane fusion protein MdtE
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (31/37);  total (31/37)

AGACGATGTCGTGCAGCTACGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCACGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTGCCATTATTATG  >  NC_000913/3660203‑3660470
                                                                                                                                       |                                                                                                                                    
aGACGATGTCGTGCAGCTACGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAg                                                                                                                                  >  1:448003/1‑140 (MQ=255)
aGACGATGTCGTGCAGCTACGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAg                                                                                                                                  <  1:375962/140‑1 (MQ=255)
 gACGATGTCGTGCAGCTACGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGc                                                                                                                                 >  1:1022105/1‑140 (MQ=255)
  aCGATGTCGTGCAGCTACGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCa                                                                                                                                <  2:302705/140‑1 (MQ=255)
     aTGTCGTGCAGCTACGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGTTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAAtt                                                                                                                             >  2:1095131/1‑140 (MQ=255)
           tGCAGCTACGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTtcctcc                                                                                                                       >  1:308596/1‑140 (MQ=255)
                  aCGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAgg                                                                                                                >  1:647757/1‑140 (MQ=255)
                  aCGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAgg                                                                                                                >  1:1004363/1‑140 (MQ=255)
                  aCGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAgg                                                                                                                >  2:936293/1‑140 (MQ=255)
                    gcgAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGaa                                                                                                              <  1:524786/140‑1 (MQ=255)
                     cgAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGaaa                                                                                                             >  1:1084101/1‑140 (MQ=255)
                             aaGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGaa                                                                                                              >  1:1090243/1‑131 (MQ=255)
                             aaGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGaa                                                                                                              <  2:1090243/131‑1 (MQ=255)
                                       aGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGa                                                                                           <  2:1022105/140‑1 (MQ=255)
                                       aGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGa                                                                                           <  1:997643/140‑1 (MQ=255)
                                       aGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGa                                                                                           <  1:936293/140‑1 (MQ=255)
                                               gCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATaa                                                                                   <  1:414465/140‑1 (MQ=255)
                                                    cAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTg                                                                              <  2:389364/140‑1 (MQ=255)
                                                         ggTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGc                                                                         >  1:70569/1‑140 (MQ=255)
                                                           tcgtcACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCtt                                                                       <  1:43881/140‑1 (MQ=255)
                                                            cgtcACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTa                                                                      <  1:466259/140‑1 (MQ=255)
                                                              tcACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAg                                                                    >  1:955105/1‑140 (MQ=255)
                                                              tcACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAg                                                                    >  1:666880/1‑140 (MQ=255)
                                                                aCCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAggg                                                                  <  2:304726/140‑1 (MQ=255)
                                                                 ccTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAgggg                                                                 <  2:1004363/140‑1 (MQ=255)
                                                                  ctctGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGa                                                                <  1:1021115/140‑1 (MQ=255)
                                                                    ctGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACt                                                              >  1:616344/1‑140 (MQ=255)
                                                                            cAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTa                                                                      <  2:1221930/124‑1 (MQ=255)
                                                                            cAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTa                                                                      >  1:1221930/1‑124 (MQ=255)
                                                                            cAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAggg                                                                  <  2:633413/128‑1 (MQ=255)
                                                                            cAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAggg                                                                  >  1:633413/1‑128 (MQ=255)
                                                                            cAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGc                                                      >  2:600572/1‑140 (MQ=255)
                                                                             aGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGCCTTTCATGGCt                                                     <  2:448003/140‑1 (MQ=255)
                                                                             aGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCt                                                     <  2:666880/140‑1 (MQ=255)
                                                                             aGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCt                                                     <  2:360768/140‑1 (MQ=255)
                                                                             aGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCt                                                     <  2:70569/140‑1 (MQ=255)
                                                                             aGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCt                                                     <  1:561613/140‑1 (MQ=255)
                                                                              ggCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTa                                                    <  2:615894/140‑1 (MQ=255)
                                                                               gCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTaa                                                   >  2:920387/1‑140 (MQ=255)
                                                                               gCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTaa                                                   <  1:67921/140‑1 (MQ=255)
                                                                               gCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTaa                                                   <  1:1095131/140‑1 (MQ=255)
                                                                                 tGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACt                                                 >  1:602044/1‑140 (MQ=255)
                                                                                 tGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACt                                                 <  1:1085165/140‑1 (MQ=255)
                                                                                         gggTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTAtt                                         >  1:406708/1‑140 (MQ=255)
                                                                                         gggTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTAtt                                         >  2:567399/1‑140 (MQ=255)
                                                                                         gggTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTAtt                                         >  1:861273/1‑140 (MQ=255)
                                                                                          ggTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTg                                        <  2:955105/140‑1 (MQ=255)
                                                                                             gATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATc                                     >  2:852398/1‑140 (MQ=255)
                                                                                             gATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATc                                     >  2:773449/1‑140 (MQ=255)
                                                                                                cGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGcc                                  <  1:920387/140‑1 (MQ=255)
                                                                                                   ttCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCgg                               <  1:378275/140‑1 (MQ=255)
                                                                                                      cGGTTTGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGttt                            <  1:134415/140‑1 (MQ=255)
                                                                                                          ttGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGc                        >  1:1165999/1‑140 (MQ=255)
                                                                                                           tGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGTACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGcc                       >  2:1167029/1‑140 (MQ=255)
                                                                                                           tGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGt                              >  2:1205562/1‑133 (MQ=255)
                                                                                                           tGCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGt                              <  1:1205562/133‑1 (MQ=255)
                                                                                                            gCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCt                      <  2:1165999/140‑1 (MQ=255)
                                                                                                            gCAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCt                      <  2:175199/140‑1 (MQ=255)
                                                                                                             cAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGtt                             >  1:835202/1‑132 (MQ=255)
                                                                                                             cAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGtt                             <  2:835202/132‑1 (MQ=255)
                                                                                                             cAACGCATTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTg                     >  2:113253/1‑140 (MQ=255)
                                                                                                                   aTTCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACt               <  2:406708/140‑1 (MQ=255)
                                                                                                                     tCGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTg             >  1:91604/1‑140 (MQ=255)
                                                                                                                      cGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTGc            <  1:875269/140‑1 (MQ=255)
                                                                                                                      cGTCCGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTGc            <  1:40235/140‑1 (MQ=255)
                                                                                                                          cGGGTATCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTGCCatt        >  1:304516/1‑140 (MQ=255)
                                                                                                                               aTCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTGCCATtattat   >  2:1165235/1‑140 (MQ=255)
                                                                                                                                tCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTGCCATTATTatg  <  2:1084101/140‑1 (MQ=255)
                                                                                                                                tCAAAGCGCGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTGCCATTATTatg  <  2:957841/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                    
AGACGATGTCGTGCAGCTACGCGAAATTGAAGCCAGCAAAGCCATCGGCGACCAGTGGGTCGTCACCTCTGGCTTGCAGGCTGGCGATCGGGTGATCGTTTCCGGTTTGCAACGCATTCGTCCGGGTATCAAAGCACGAGCAATTTCCTCCAGCCAGGAAAACGCCAGCACCGAATCGAAACAATAACGTTGCAGGCTTAAGGGGACTTTCATGGCTAACTATTTTATTGATCGCCCGGTTTTTGCCTGGGTACTTGCCATTATTATG  >  NC_000913/3660203‑3660470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A