Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
191 |
83.5 |
2830284 |
99.3% |
2810472 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,661,184 |
T→C |
G257G (GGT→GGC) |
mdtF → |
multidrug efflux pump RND permease MdtF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,661,184 | 0 | T | C | 100.0%
| 313.6
/ NA
| 86 | G257G (GGT→GGC) | mdtF | multidrug efflux pump RND permease MdtF |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/51); total (35/51) |
AACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAACGCCCTGGAT > NC_000913/3661047‑3661316
|
aacCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTc > 1:1252852/1‑140 (MQ=255)
acCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCg > 2:257316/1‑140 (MQ=255)
ccAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGc < 1:157990/140‑1 (MQ=255)
ccAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGc < 1:1137668/140‑1 (MQ=255)
tCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGtgct > 1:612718/1‑140 (MQ=255)
tCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGtgct < 1:830217/140‑1 (MQ=255)
ccGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGtgctg < 1:264051/140‑1 (MQ=255)
ccGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCCGTTGAAAGTTCAGCAAGATGGCTCGCAAGtgctg < 2:1252852/140‑1 (MQ=255)
ggtggtCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGtgctgct > 1:1091229/1‑140 (MQ=255)
aaCTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGAt > 2:932522/1‑140 (MQ=255)
cTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGt > 1:1248713/1‑140 (MQ=255)
ggTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGtcgc > 1:32326/1‑140 (MQ=255)
tGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGtcgctc > 2:1374504/1‑140 (MQ=255)
tGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGtcgctc < 2:340010/140‑1 (MQ=255)
tGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGtcgctc > 1:30552/1‑140 (MQ=255)
aTGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGt < 2:1096023/140‑1 (MQ=255)
aTGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGt < 2:539293/140‑1 (MQ=255)
aTGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGt < 1:631544/140‑1 (MQ=255)
tGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTc < 2:858909/140‑1 (MQ=255)
tGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTc > 1:1325208/1‑140 (MQ=255)
tGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTc < 2:325291/140‑1 (MQ=255)
tGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTc > 2:701849/1‑140 (MQ=255)
cacaGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGaa < 1:478742/140‑1 (MQ=255)
caGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACt < 2:289730/140‑1 (MQ=255)
caGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACt > 1:70537/1‑140 (MQ=255)
gcggcAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTgg > 2:224138/1‑140 (MQ=255)
ggcAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTgggg < 1:466136/140‑1 (MQ=255)
cAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCg < 1:1092843/140‑1 (MQ=255)
aGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCgg < 1:237405/140‑1 (MQ=255)
aCCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGaa < 1:597547/140‑1 (MQ=255)
aCCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGaa < 2:189178/140‑1 (MQ=255)
aCCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGaa < 2:709796/140‑1 (MQ=255)
aCCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGaa < 1:932522/140‑1 (MQ=255)
aCCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGaa < 1:860203/140‑1 (MQ=255)
cagcagCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGa < 2:32326/140‑1 (MQ=255)
agcagcTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAg < 2:826310/138‑1 (MQ=255)
agcagcTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAg > 1:826310/1‑138 (MQ=255)
agcagcTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGat < 1:257316/140‑1 (MQ=255)
gcTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGattatt > 2:617930/1‑140 (MQ=255)
aCGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGAGTCGAACTTGGGGCGGAAGATTATTCCAcc > 2:866370/1‑140 (MQ=255)
cTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTgg > 1:901736/1‑140 (MQ=255)
cTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTgg < 1:1181340/140‑1 (MQ=255)
cTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTgg < 1:78621/140‑1 (MQ=255)
cTCGAACATTGTGCAGACGCGTCTGCAAACGCAGGAAGAACTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCCCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTgg < 2:1248713/140‑1 (MQ=255)
cGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCa < 2:483765/140‑1 (MQ=255)
cGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCa < 2:16881/140‑1 (MQ=255)
cGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCa > 1:1181491/1‑140 (MQ=255)
cGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCa < 2:612718/140‑1 (MQ=255)
tCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGc > 1:214407/1‑140 (MQ=255)
tgtgCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCtata < 2:189345/140‑1 (MQ=255)
gtgCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGc < 2:503650/131‑1 (MQ=255)
gtgCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGc > 1:503650/1‑131 (MQ=255)
aGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGc < 1:650072/140‑1 (MQ=255)
gACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCa > 2:374491/1‑140 (MQ=255)
aCGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCaa > 2:189303/1‑140 (MQ=255)
gcgTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAAc < 2:1091229/140‑1 (MQ=255)
cgTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAAcc > 2:1031078/1‑140 (MQ=255)
cgTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAAcc > 1:981876/1‑140 (MQ=255)
tCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACctg > 2:827928/1‑140 (MQ=255)
tCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACctg > 1:99634/1‑140 (MQ=255)
tCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACctg > 1:279612/1‑140 (MQ=255)
tCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACctg > 1:50251/1‑140 (MQ=255)
tGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACctgct > 2:779490/1‑140 (MQ=255)
aaCGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCg < 2:99634/140‑1 (MQ=255)
gCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGa > 1:776695/1‑140 (MQ=255)
ccGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGAt < 2:94270/140‑1 (MQ=255)
ccGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGAt < 2:905597/140‑1 (MQ=255)
aagaaTTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGcc < 1:972446/140‑1 (MQ=255)
aagaaTTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGcc > 1:851469/1‑140 (MQ=255)
aagaaTTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGcc < 2:50251/140‑1 (MQ=255)
aagaaTTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGcc > 2:1091045/1‑140 (MQ=255)
tttGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCaa > 1:825043/1‑140 (MQ=255)
aaTCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTg > 2:1127648/1‑140 (MQ=255)
aaTCCTGTTGAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTg > 2:162968/1‑140 (MQ=255)
gAAGGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCaa < 1:722638/140‑1 (MQ=255)
gAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCaa < 1:1344494/140‑1 (MQ=255)
gAAAGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCaa < 1:617930/140‑1 (MQ=255)
aaaGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCaaa < 1:1133718/140‑1 (MQ=255)
aaGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAAc < 2:70537/140‑1 (MQ=255)
aGTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAACg < 2:851469/140‑1 (MQ=255)
gTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAACGc < 2:776695/140‑1 (MQ=255)
gTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAACGc < 2:279612/140‑1 (MQ=255)
gTTCAGCAAGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAACGc < 1:1127648/140‑1 (MQ=255)
aaGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAACGCCCTGGAt < 1:224138/140‑1 (MQ=255)
aaGATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAACGCCCTGGAt < 2:103652/140‑1 (MQ=255)
gATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCaa > 2:1123131/1‑127 (MQ=255)
gATGGCTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCaa < 1:1123131/127‑1 (MQ=255)
|
AACCAGATTTCCGGTGGTCAACTGGGTGGCATGCCACAGGCGGCAGACCAGCAGCTAAACGCCTCGATCATTGTGCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTATAACGGCAAACCTGCTGCCGGGATCGCCATCAAACTGGCTGCCGGAGCAAACGCCCTGGAT > NC_000913/3661047‑3661316
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
