Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,662,411	A→G	L666L (TTA→TTG)	mdtF →	multidrug efflux pump RND permease MdtF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,662,411	0	A	G	100.0%	486.3 / NA	133	L666L (TTA→TTG)	mdtF	multidrug efflux pump RND permease MdtF
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (59/74); total (59/74)

Only 100 of 133 total aligned reads displayed.

AACAACGGCCTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTACCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATCACCGAATCAGGT  >  NC_000913/3662274‑3662545

aacaacGGCCTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGcc                                                                                                                                      >  2:2362011/1‑140 (MQ=255)

   aacGGCCTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCcgc                                                                                                                                   <  2:939765/140‑1 (MQ=255)

   aacGGCCTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCcgc                                                                                                                                   <  2:687259/140‑1 (MQ=255)

    acGGCCTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCcgcg                                                                                                                                  >  2:771104/1‑140 (MQ=255)

        ccTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTgg                                                                                                                              <  1:2196632/140‑1 (MQ=255)

        ccTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTgg                                                                                                                              >  1:2149371/1‑140 (MQ=255)

        ccTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTgg                                                                                                                              <  2:1354344/140‑1 (MQ=255)

        ccTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTgg                                                                                                                              >  1:2017207/1‑140 (MQ=255)

        ccTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTgg                                                                                                                              >  1:579723/1‑140 (MQ=255)

          tGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCt                                                                                                                            <  2:1846419/140‑1 (MQ=255)

          tGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCt                                                                                                                            <  2:698263/140‑1 (MQ=255)

            gCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGa                                                                                                                          <  2:2149371/140‑1 (MQ=255)

            gCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGa                                                                                                                          <  2:2017207/140‑1 (MQ=255)

             cGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGaa                                                                                                                         <  1:771104/140‑1 (MQ=255)

              gTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAAc                                                                                                                        <  2:1018322/140‑1 (MQ=255)

                 tATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTgg                                                                                                                     >  1:526059/1‑140 (MQ=255)

                 tATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTgg                                                                                                                     >  1:2053404/1‑140 (MQ=255)

                    cAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTa                                                                                                                  <  1:2397840/140‑1 (MQ=255)

                     aGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTAc                                                                                                                 <  1:208103/140‑1 (MQ=255)

                      gTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTAcc                                                                                                                >  2:1546795/1‑140 (MQ=255)

                      gTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTAcc                                                                                                                >  2:1573027/1‑140 (MQ=255)

                      gTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTAcc                                                                                                                >  1:2311967/1‑140 (MQ=255)

                       tctcAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACcg                                                                                                               >  1:2141111/1‑140 (MQ=255)

                        ctcAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACcgc                                                                                                              <  2:741387/140‑1 (MQ=255)

                         tcAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACcgcg                                                                                                             <  1:1992437/140‑1 (MQ=255)

                          cAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGt                                                                                                            <  1:796377/140‑1 (MQ=255)

                           aaGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTc                                                                                                           <  2:2072613/140‑1 (MQ=255)

                           aaGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTc                                                                                                           >  1:416899/1‑140 (MQ=255)

                            aGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCa                                                                                                          >  1:462046/1‑140 (MQ=255)

                            aGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCa                                                                                                          >  1:1286289/1‑140 (MQ=255)

                              ccGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAgg                                                                                                        <  2:1721452/140‑1 (MQ=255)

                              ccGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAgg                                                                                                        <  1:1607777/140‑1 (MQ=255)

                               cGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGt                                                                                                       <  1:1590659/140‑1 (MQ=255)

                                 tGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGttt                                                                                                     >  1:1505765/1‑140 (MQ=255)

                                 tGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGttt                                                                                                     <  1:2385509/140‑1 (MQ=255)

                                 tGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGttt                                                                                                     >  2:1198845/1‑140 (MQ=255)

                                 tGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGttt                                                                                                     >  2:1135149/1‑140 (MQ=255)

                                 tGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGttt                                                                                                     <  2:1828783/140‑1 (MQ=255)

                                    tCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGa                                                                                                  <  2:148601/140‑1 (MQ=255)

                                      tGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGata                                                                                                <  2:2089147/140‑1 (MQ=255)

                                      tGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGata                                                                                                <  2:1854085/140‑1 (MQ=255)

                                      tGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGata                                                                                                <  1:1329172/140‑1 (MQ=255)

                                        aaCGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATg                                                                                              >  2:2375461/1‑140 (MQ=255)

                                         aCGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATgg                                                                                             <  1:2350363/140‑1 (MQ=255)

                                           gtgtCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGaa                                                                                           >  1:151098/1‑140 (MQ=255)

                                            tgtCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAAc                                                                                          <  2:447421/140‑1 (MQ=255)

                                             gtCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAAct                                                                                         >  1:65455/1‑140 (MQ=255)

                                             gtCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAAct                                                                                         >  2:2353084/1‑140 (MQ=255)

                                             gtCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAAct                                                                                         >  2:1771225/1‑140 (MQ=255)

                                             gtCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAAct                                                                                         >  2:808512/1‑140 (MQ=255)

                                             gtCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAAct                                                                                         >  2:1709391/1‑140 (MQ=255)

                                              tCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAActg                                                                                        <  1:995160/140‑1 (MQ=255)

                                              tCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAActg                                                                                        >  1:1827521/1‑140 (MQ=255)

                                                 gTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAActgctg                                                                                     <  2:192331/140‑1 (MQ=255)

                                                  tGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTgg                                                                                    >  1:94586/1‑140 (MQ=255)

                                                  tGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTgg                                                                                    <  1:717011/140‑1 (MQ=255)

                                                   gAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGa                                                                                   <  2:2211868/140‑1 (MQ=255)

                                                   gAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGa                                                                                   <  2:2141111/140‑1 (MQ=255)

                                                        aaaCTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACg                                                                              <  2:2311967/140‑1 (MQ=255)

                                                           cTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTa                                                                           >  1:1165516/1‑140 (MQ=255)

                                                               gatACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTCCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGGTATGGAACTGCTGGACAACGGTAACCt                                                                       <  2:2265134/138‑1 (MQ=255)

                                                               gTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCt                                                                       <  1:1771225/140‑1 (MQ=255)

                                                                ttACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTg                                                                      >  1:1694474/1‑140 (MQ=255)

                                                                   ccGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTgggg                                                                   <  2:416899/140‑1 (MQ=255)

                                                                       gATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACg                                                               <  1:1674370/140‑1 (MQ=255)

                                                                       gATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACg                                                               <  2:628829/140‑1 (MQ=255)

                                                                                 cGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAAc                                                     >  2:425218/1‑140 (MQ=255)

                                                                                    gCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCa                                                  >  1:1206077/1‑140 (MQ=255)

                                                                                       aTGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGgc                                               <  1:2362011/140‑1 (MQ=255)

                                                                                              cGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGgcgc                                             <  2:2254027/135‑1 (MQ=255)

                                                                                              cGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGgcgc                                             >  1:2254027/1‑135 (MQ=255)

                                                                                              cGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAAc                                        >  2:973112/1‑140 (MQ=255)

                                                                                              cGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAAc                                        <  2:126046/140‑1 (MQ=255)

                                                                                              cGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAAc                                        <  2:1252130/140‑1 (MQ=255)

                                                                                               gTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACg                                       <  2:2102204/140‑1 (MQ=255)

                                                                                               gTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACg                                       <  1:1198845/140‑1 (MQ=255)

                                                                                                ttAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGa                                      <  1:1135149/140‑1 (MQ=255)

                                                                                                ttAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGa                                      <  2:2219890/140‑1 (MQ=255)

                                                                                                ttAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGa                                      <  2:2283254/140‑1 (MQ=255)

                                                                                                ttAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGa                                      <  1:2375461/140‑1 (MQ=255)

                                                                                                ttAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGa                                      <  2:1023020/140‑1 (MQ=255)

                                                                                                ttAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGa                                      >  1:96400/1‑140 (MQ=255)

                                                                                                    gCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTg                                  <  2:1932311/140‑1 (MQ=255)

                                                                                                    gCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTg                                  <  2:231362/140‑1 (MQ=255)

                                                                                                        tATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTAt                              >  2:2184263/1‑140 (MQ=255)

                                                                                                        tATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTAt                              >  2:2314548/1‑140 (MQ=255)

                                                                                                        tATCAATAAAGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTAt                              >  2:2151376/1‑140 (MQ=255)

                                                                                                               aaaGCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGc                       >  1:1495171/1‑140 (MQ=255)

                                                                                                                  gccatcgtcTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAgc                    >  2:959996/5‑140 (MQ=255)

                                                                                                                  gCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAgc                    >  1:9108/1‑140 (MQ=255)

                                                                                                                  gCCGTCGTCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAgc                    >  1:1747568/1‑140 (MQ=255)

                                                                                                                    cgtcgtCTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAgcgc                  >  2:471632/1‑140 (MQ=255)

                                                                                                                      tcgtcTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTg                         <  1:2107933/131‑1 (MQ=255)

                                                                                                                        gtcTTCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATc              <  2:518358/140‑1 (MQ=255)

                                                                                                                            tCCCGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATCACCg          >  1:2300593/1‑140 (MQ=255)

                                                                                                                              ccGTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATCACCGaa        <  2:1165516/140‑1 (MQ=255)

                                                                                                                                gTTCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATCACCGAATc      >  2:542058/1‑140 (MQ=255)

                                                                                                                                 ttCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATCACCGAATCa     >  1:154919/1‑140 (MQ=255)

                                                                                                                                 ttCAACTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATCACCGAATCa     >  1:1399555/1‑140 (MQ=255)

                                                                                                                                    aaCTTGCCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATCACCGAATCAGGt  <  1:425218/140‑1 (MQ=255)

AACAACGGCCTGGCGTTTATCAGTCTCAAGCCGTGGTCTGAACGTGTCGGTGAGGAAAACTCGGTTACCGCGATCATTCAGCGGGCAATGATTGCGTTAAGCAGTATCAATAAAGCCGTCGTCTTCCCGTTCAACTTACCCGCGGTGGCTGAACTGGGTACCGCGTCAGGTTTTGATATGGAACTGCTGGACAACGGTAACCTGGGGCACGAAAAACTAACCCAGGCGCGAAACGAGCTGTTATCACTGGCAGCGCAATCACCGAATCAGGT  >  NC_000913/3662274‑3662545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A