Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,668,536	A→G	V218A (GTC→GCC)	ccp ←	cytochrome c peroxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,668,536	0	A	G	100.0%	200.0 / NA	57	V218A (GTC→GCC)	ccp	cytochrome c peroxidase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (33/24); total (33/24)

TCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTGCA  >  NC_000913/3668400‑3668671

tcctccAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGgcgc                                                                                                                                      <  2:774430/140‑1 (MQ=255)

tCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGgcgc                                                                                                                                      <  1:532012/140‑1 (MQ=255)

        ccTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCa                                                                                                                              >  1:263942/1‑140 (MQ=255)

            aTCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCa                                                                                                                          >  2:16448/1‑140 (MQ=255)

               cTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACg                                                                                                                       >  1:699753/1‑140 (MQ=255)

                  cAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCAt                                                                                                                    >  1:668506/1‑140 (MQ=255)

                         gCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATg                                                                                                             >  2:768578/1‑140 (MQ=255)

                          ccGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGa                                                                                                            <  2:699753/140‑1 (MQ=255)

                              aCGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAgcgc                                                                                                        <  2:263942/140‑1 (MQ=255)

                               cGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCa                                                                                                       >  2:186215/1‑140 (MQ=255)

                                 aCCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATg                                                                                                     >  2:12985/1‑140 (MQ=255)

                                   cATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa                                                                                                   >  1:167020/1‑140 (MQ=255)

                                         aGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTg                                                                                             <  1:702889/140‑1 (MQ=255)

                                          gAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa                                                                                                   >  2:528653/1‑133 (MQ=255)

                                          gAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa                                                                                                   <  1:528653/133‑1 (MQ=255)

                                           aaCTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa                                                                                                   <  2:878290/132‑1 (MQ=255)

                                           aaCTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa                                                                                                   >  1:878290/1‑132 (MQ=255)

                                            aCTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAgc                                                                                                          >  1:100420/1‑124 (MQ=255)

                                            aCTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAgc                                                                                                          <  2:100420/124‑1 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACAGCAATCGATGTTTTTCTGCCATCGGCGCCCCCCTCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  2:822107/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCa                                                                                       <  2:291461/139‑1 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCa                                                                                       >  1:291461/1‑139 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  1:541344/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  2:632558/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  1:482397/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  2:454558/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  1:302435/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  2:336053/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  2:80816/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  1:755598/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  2:793549/1‑140 (MQ=255)

                                                cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATATTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAg                                                                                      >  2:768393/1‑140 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  1:80816/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  2:302435/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  2:755598/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  2:482397/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  2:12530/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  1:105627/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  1:12985/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  1:353952/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  1:359149/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  2:167020/140‑1 (MQ=255)

                                                            tACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  1:768393/140‑1 (MQ=255)

                                                               tGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGAt                                                                       >  1:288013/1‑140 (MQ=255)

                                                                  gTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGAt                                                                                 <  1:578845/127‑1 (MQ=255)

                                                                  gTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGAt                                                                                 >  2:578845/1‑127 (MQ=255)

                                                                      aaTACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATa                                                                <  1:336053/140‑1 (MQ=255)

                                                                           cGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  2:74563/125‑1 (MQ=255)

                                                                           cGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          >  1:783103/1‑125 (MQ=255)

                                                                           cGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  2:783103/125‑1 (MQ=255)

                                                                           cGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          >  1:74563/1‑125 (MQ=255)

                                                                             tCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          >  1:353668/1‑123 (MQ=255)

                                                                             tCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg                                                                          <  2:353668/123‑1 (MQ=255)

                                                                             tCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCa                                                         >  1:383146/1‑140 (MQ=255)

                                                                                                   tGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTgcg                                   <  1:632558/140‑1 (MQ=255)

                                                                                                             acaccaaTCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAgg                         >  1:600628/1‑140 (MQ=255)

                                                                                                                    tCGATGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGtttt                  >  1:718789/1‑140 (MQ=255)

                                                                                                                        tGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGttttt                 <  2:315460/137‑1 (MQ=255)

                                                                                                                        tGTTTTTCTGCCATCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGttttt                 >  1:315460/1‑137 (MQ=255)

                                                                                                                                    aTCGGCGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTGCa  >  1:161654/1‑140 (MQ=255)

TCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTGCA  >  NC_000913/3668400‑3668671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A