Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,798,171 A→G L408L (TTA→TTG)  waaL → O‑antigen ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,798,1710AG100.0% 397.8 / NA 107L408L (TTA→TTG) waaLO‑antigen ligase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (59/48);  total (59/48)

Only 100 of 107 total aligned reads displayed.

TTTTATATAGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTA  >  NC_000913/3798037‑3798306
                                                                                                                                      |                                                                                                                                       
ttttATATAGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGt                                                                                                                                    >  2:1165405/1‑140 (MQ=255)
ttttATATAGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGt                                                                                                                                    >  1:650907/1‑140 (MQ=255)
 tttATATAGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTc                                                                                                                                   <  1:1165405/140‑1 (MQ=255)
   tatataGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCAt                                                                                                                                 >  1:742951/1‑140 (MQ=255)
     tataGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATta                                                                                                                               <  1:1321873/140‑1 (MQ=255)
      ataGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATtaa                                                                                                                              <  2:650907/140‑1 (MQ=255)
      ataGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATtaa                                                                                                                              <  2:477636/140‑1 (MQ=255)
        aGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATtaata                                                                                                                            >  2:414630/1‑140 (MQ=255)
          cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCt                                                                                                                                       >  2:811782/1‑127 (MQ=255)
          cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCg                                                                                                                                     <  1:88500/129‑1 (MQ=255)
          cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCg                                                                                                                                     >  2:88500/1‑129 (MQ=255)
          cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTaataat                                                                                                                          >  2:149426/1‑140 (MQ=255)
          cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTaataat                                                                                                                          <  1:1163041/140‑1 (MQ=255)
          cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTaataat                                                                                                                          <  1:621235/140‑1 (MQ=255)
          cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTaataat                                                                                                                          >  2:923400/1‑140 (MQ=255)
          cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTaataat                                                                                                                          >  2:621235/1‑140 (MQ=255)
            tataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTaataat                                                                                                                          <  1:557846/138‑1 (MQ=255)
            tataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTaataat                                                                                                                          >  2:557846/1‑138 (MQ=255)
            tataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCg                                                                                                                        >  1:99209/1‑140 (MQ=255)
            tataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCg                                                                                                                        >  2:298051/1‑140 (MQ=255)
            tataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCg                                                                                                                        >  1:499626/1‑140 (MQ=255)
             ataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGt                                                                                                                       <  1:688281/140‑1 (MQ=255)
             ataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGt                                                                                                                       >  2:334835/1‑140 (MQ=255)
             ataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGt                                                                                                                       <  1:1411898/140‑1 (MQ=255)
             ataAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGt                                                                                                                       <  2:120795/140‑1 (MQ=255)
               aaaaaaCGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTaa                                                                                                                     <  2:820988/140‑1 (MQ=255)
               aaaaaaCGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTaa                                                                                                                     >  1:1112052/1‑140 (MQ=255)
                  aaaCGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAacaa                                                                                                                  <  1:334835/140‑1 (MQ=255)
                  aaaCGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAacaa                                                                                                                  <  2:213344/140‑1 (MQ=255)
                  aaaCGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAacaa                                                                                                                  <  2:1112052/140‑1 (MQ=255)
                   aaCGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAacaat                                                                                                                 <  1:258113/140‑1 (MQ=255)
                    aCGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAacaata                                                                                                                >  1:591861/1‑140 (MQ=255)
                    aCGAGCTTTGGGTTTGTTGATATTAACGCTCGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAacaata                                                                                                                >  2:724691/1‑140 (MQ=255)
                      gAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAacaataca                                                                                                              <  1:1348470/140‑1 (MQ=255)
                         cTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACaatt                                                                                                           >  1:430727/1‑140 (MQ=255)
                                     tgATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATaa                                                                                               <  1:879577/140‑1 (MQ=255)
                                      gATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATaaa                                                                                              <  1:605274/140‑1 (MQ=255)
                                              cGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTa                                                                                      >  2:1111986/1‑140 (MQ=255)
                                              cGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTa                                                                                      >  2:870601/1‑140 (MQ=255)
                                              cGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTa                                                                                      >  1:482955/1‑140 (MQ=255)
                                                   ggCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTaagaag                                                                                 >  1:1293354/1‑140 (MQ=255)
                                                   ggCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTaagaag                                                                                 >  1:427048/1‑140 (MQ=255)
                                                        tgtgGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTaagaag                                                                                 >  1:1206323/1‑135 (MQ=255)
                                                         gtgGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGtt                                                                           >  2:819344/1‑140 (MQ=255)
                                                         gtgGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGtt                                                                           >  1:528446/1‑140 (MQ=255)
                                                         gtgGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGtt                                                                           >  1:1237849/1‑140 (MQ=255)
                                                             ggATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaaa                                                                       <  2:1248851/140‑1 (MQ=255)
                                                               aTTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACt                                                                     <  2:258695/140‑1 (MQ=255)
                                                               aTTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACt                                                                     <  2:442963/140‑1 (MQ=255)
                                                               aTTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACt                                                                     <  2:1293354/140‑1 (MQ=255)
                                                               aTTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACt                                                                     <  2:742951/140‑1 (MQ=255)
                                                               aTTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACt                                                                     <  1:1111986/140‑1 (MQ=255)
                                                                 tGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTATTGCTCGTCATTAATAATCGTAACAATACAATTAATTAGGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCa                                                                   <  2:228075/140‑1 (MQ=255)
                                                                    aCTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActt                                                                <  2:499626/140‑1 (MQ=255)
                                                                    aCTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActt                                                                >  1:841379/1‑140 (MQ=255)
                                                                       cAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActtctt                                                             <  1:724691/140‑1 (MQ=255)
                                                                       cAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActt                                                                >  1:330442/1‑137 (MQ=255)
                                                                       cAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActt                                                                <  2:330442/137‑1 (MQ=255)
                                                                        aGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTa                                                            >  2:1095693/1‑140 (MQ=255)
                                                                        aGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTa                                                            >  1:869015/1‑140 (MQ=255)
                                                                             tgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCtat                                                       <  1:819344/140‑1 (MQ=255)
                                                                             tgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCtat                                                       >  1:578378/1‑140 (MQ=255)
                                                                              gtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCtata                                                      >  1:236222/1‑140 (MQ=255)
                                                                                gatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACa                                                    <  1:414630/140‑1 (MQ=255)
                                                                                  tCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActt                                                                >  1:1177988/1‑126 (MQ=255)
                                                                                  tCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActt                                                                <  2:1177988/126‑1 (MQ=255)
                                                                                  tCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAAc                                                  >  2:1281760/1‑140 (MQ=255)
                                                                                    atatGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACtt                                                >  2:1337632/1‑140 (MQ=255)
                                                                                    atatGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACtt                                                >  2:1407362/1‑140 (MQ=255)
                                                                                      atGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTTAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACtt                                                >  1:169009/1‑138 (MQ=255)
                                                                                      atGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTTAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACtt                                                <  2:169009/138‑1 (MQ=255)
                                                                                      atGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTaa                                              >  2:1376610/1‑140 (MQ=255)
                                                                                      atGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCATCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTaa                                              <  2:1312005/140‑1 (MQ=255)
                                                                                       tGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAt                                             <  1:406496/140‑1 (MQ=255)
                                                                                        gggCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtc                                            <  2:430727/140‑1 (MQ=255)
                                                                                         ggCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtct                                           >  1:155113/1‑140 (MQ=255)
                                                                                           cACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATctct                                         >  1:684412/1‑140 (MQ=255)
                                                                                           cACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATctct                                         >  2:780009/1‑140 (MQ=255)
                                                                                           cACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATctct                                         >  2:1001785/1‑140 (MQ=255)
                                                                                           cACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATctct                                         >  2:748381/1‑140 (MQ=255)
                                                                                           cACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATctct                                         >  1:44688/1‑140 (MQ=255)
                                                                                             cGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCttt                                       >  2:416495/1‑140 (MQ=255)
                                                                                             cGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCttt                                       >  2:1145211/1‑140 (MQ=255)
                                                                                              gcagcaTTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTa                                      <  2:528446/140‑1 (MQ=255)
                                                                                              gcagcaTTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGCAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTa                                      <  2:1237849/140‑1 (MQ=255)
                                                                                                agcaTTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACt                                    >  1:1377818/1‑140 (MQ=255)
                                                                                                   aTTCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGaa                                 <  1:923400/140‑1 (MQ=255)
                                                                                                    ttCCAATTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAAt                                >  2:1091392/1‑140 (MQ=255)
                                                                                                         aTTATCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGtt                           <  1:1001785/140‑1 (MQ=255)
                                                                                                            aTCATTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTa                          >  2:538524/1‑138 (MQ=255)
                                                                                                               aTTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGtt                     >  1:259012/1‑140 (MQ=255)
                                                                                                               aTTATATCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGtt                     >  1:91073/1‑140 (MQ=255)
                                                                                                                    atCCGCTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGt                <  1:870601/140‑1 (MQ=255)
                                                                                                                         cTATAGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGa           >  2:681246/1‑140 (MQ=255)
                                                                                                                          tataGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGat          >  1:526514/1‑140 (MQ=255)
                                                                                                                             aGTCCTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATc       >  2:336946/1‑140 (MQ=255)
                                                                                                                                ccTCTTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCttt    <  2:591861/140‑1 (MQ=255)
                                                                                                                                 ctctTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCtttt   >  2:1046794/1‑140 (MQ=255)
                                                                                                                                  tctTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTa  <  1:572733/140‑1 (MQ=255)
                                                                                                                                  tctTGCTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTa  <  2:1377818/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
TTTTATATAGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTA  >  NC_000913/3798037‑3798306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A