Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,915,508	(A)_8→9	intergenic (‑308/+45)	glmU ← / ← atpC	fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase/ATP synthase F1 complex subunit epsilon

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,915,500	1	.	A	98.6%	255.1 / ‑3.6	72	intergenic (‑300/+53)	glmU/atpC	fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase/ATP synthase F1 complex subunit epsilon
Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (43/28); total (44/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01

GAAAATTAAGGCAGTACCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTA  >  NC_000913/3915362‑3915630

gAAAATTAAGGCAGTACCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑‑a                                                                                                                                    <  2:454623/140‑1 (MQ=255)

      tAAGGCAGTACCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑‑aaa‑aaaa                                                                                                                             <  2:622697/140‑1 (MQ=255)

        aGGCAGTACCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑‑aaa‑aaaaaa                                                                                                                           >  2:733813/1‑139 (MQ=255)

             gTACCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAagccag                                                                                                                       >  1:464910/1‑140 (MQ=255)

              tACCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAagccagc                                                                                                                      <  2:415853/140‑1 (MQ=255)

               aCCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAagccagcc                                                                                                                     >  1:911976/1‑140 (MQ=255)

                        tAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAg                                                                                                            >  1:273461/1‑140 (MQ=255)

                         aaGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGa                                                                                                           >  1:83244/1‑140 (MQ=255)

                          aGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGAc                                                                                                          >  1:1364970/1‑140 (MQ=255)

                          aGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGAc                                                                                                          >  2:67873/1‑140 (MQ=255)

                          aGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGAc                                                                                                          >  1:311204/1‑140 (MQ=255)

                          aGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGAc                                                                                                          >  1:1056977/1‑140 (MQ=255)

                           gCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAagccagcc                                                                                                                     >  2:477799/1‑128 (MQ=255)

                           gCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAagccagcc                                                                                                                     <  1:477799/128‑1 (MQ=255)

                           gCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACt                                                                                                         >  1:268494/1‑140 (MQ=255)

                              tCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGc                                                                                                      >  1:364816/1‑140 (MQ=255)

                               cAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCt                                                                                                     >  2:778467/1‑140 (MQ=255)

                                aGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCtt                                                                                                    <  1:815356/140‑1 (MQ=255)

                                 ggTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCttt                                                                                                   <  1:778467/140‑1 (MQ=255)

                                     gATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCGGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTtgtg                                                                                               <  1:237313/140‑1 (MQ=255)

                                     gATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTtgtg                                                                                               <  2:1364970/140‑1 (MQ=255)

                                     gATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTtgtg                                                                                               <  1:733813/140‑1 (MQ=255)

                                      aTGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGc                                                                                              >  2:451163/1‑140 (MQ=255)

                                           tttGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTc                                                                                         >  1:523801/1‑140 (MQ=255)

                                            ttGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCa                                                                                        >  2:538082/1‑140 (MQ=255)

                                             tGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCaa                                                                                       >  2:1024706/1‑140 (MQ=255)

                                             tGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCaa                                                                                       <  2:461084/140‑1 (MQ=255)

                                               ctctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGc                                                                                     <  2:120821/140‑1 (MQ=255)

                                               ctctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGc                                                                                     <  2:273461/140‑1 (MQ=255)

                                               ctctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGc                                                                                     <  1:1198389/140‑1 (MQ=255)

                                                 ctTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCg                                                                                   >  2:1387141/1‑140 (MQ=255)

                                                   tATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGgt                                                                                 >  1:1109747/1‑140 (MQ=255)

                                                              aTGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCt                                                                      >  2:1133990/1‑140 (MQ=255)

                                                              aTGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCt                                                                      >  2:1069604/1‑140 (MQ=255)

                                                              aTGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCt                                                                      >  2:1068290/1‑140 (MQ=255)

                                                               tGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCtt                                                                     >  2:1231389/1‑140 (MQ=255)

                                                                         ggAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCaa                                                           <  1:566572/140‑1 (MQ=255)

                                                                         ggAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑‑AAAGAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCaa                                                           >  2:877518/1‑140 (MQ=255)

                                                                          gAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAAc                                                          >  1:1110430/1‑140 (MQ=255)

                                                                          gAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAAc                                                          >  2:757961/1‑140 (MQ=255)

                                                                           aaaaCAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACt                                                         <  1:757961/140‑1 (MQ=255)

                                                                                  gggggTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAAc                                                  >  2:1154563/1‑140 (MQ=255)

                                                                                    gggTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGC‑TTTTTGGTCAACTCGATAAcgcg                                               <  1:1024706/140‑1 (MQ=255)

                                                                                                agcagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGa                                    <  1:1068290/140‑1 (MQ=255)

                                                                                                agcagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGa                                    <  2:202765/140‑1 (MQ=255)

                                                                                                agcagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGa                                    <  1:877518/140‑1 (MQ=255)

                                                                                                 gcagGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGAt                                   >  1:455915/1‑140 (MQ=255)

                                                                                                          aTGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGc                          <  2:911976/140‑1 (MQ=255)

                                                                                                          aTGTGAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGc                          <  1:1069604/140‑1 (MQ=255)

                                                                                                           tgtgAACGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGcc                         <  2:1056977/140‑1 (MQ=255)

                                                                                                               aaCGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGtt                     <  2:85087/140‑1 (MQ=255)

                                                                                                               aaCGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGtt                     >  1:622482/1‑140 (MQ=255)

                                                                                                               aaCGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGtt                     >  1:537837/1‑140 (MQ=255)

                                                                                                               aaCGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGtt                     >  1:1137055/1‑140 (MQ=255)

                                                                                                                aCGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTc                    >  2:435442/1‑140 (MQ=255)

                                                                                                                 cGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTcc                   >  1:918300/1‑140 (MQ=255)

                                                                                                                 cGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTcc                   >  2:536725/1‑140 (MQ=255)

                                                                                                                 cGCTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCCATCGCTTTGGCCAGTTcc                   >  2:1093496/1‑140 (MQ=255)

                                                                                                                   cTATTCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGc                 >  1:243675/1‑140 (MQ=255)

                                                                                                                       tCAGGACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGAc             >  1:1159878/1‑140 (MQ=255)

                                                                                                                           gACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCt         <  2:464910/140‑1 (MQ=255)

                                                                                                                           gACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCt         <  2:243675/140‑1 (MQ=255)

                                                                                                                           gACGGGTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCt         <  1:630481/140‑1 (MQ=255)

                                                                                                                              gggTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAg      >  1:945846/1‑140 (MQ=255)

                                                                                                                               ggTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGc     <  2:455915/140‑1 (MQ=255)

                                                                                                                                gTCACACGCGCAAAAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGc     >  1:1149761/1‑140 (MQ=255)

                                                                                                                                gTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCg    >  1:225573/1‑140 (MQ=255)

                                                                                                                                gTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCg    >  2:652474/1‑140 (MQ=255)

                                                                                                                                gTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCg    >  2:710304/1‑140 (MQ=255)

                                                                                                                                gTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCg    >  1:771195/1‑140 (MQ=255)

                                                                                                                                gTCACACGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGACGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCg    >  2:564119/1‑140 (MQ=255)

                                                                                                                                  cacaCGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCt         >  1:1084936/1‑133 (MQ=255)

                                                                                                                                  cacaCGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCt         <  2:1084936/133‑1 (MQ=255)

                                                                                                                                   acacGCGCAAAAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTa  <  2:1149761/140‑1 (MQ=255)

                                                                                                                                     acGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGcc          >  2:786855/1‑129 (MQ=255)

                                                                                                                                     acGCGCA‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGcc          <  1:786855/129‑1 (MQ=255)

GAAAATTAAGGCAGTACCTTAATTTAAGCGTCAGGTGGATGTTTTTGCTCTTATTTCGATCAATGAATAAACAGGAAAACAGGGGGGTTTTATATCAGCAGGATCTATGTGAACGCTATTCAGGACGGGTCACACGCGC‑‑AAA‑AAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTA  >  NC_000913/3915362‑3915630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A