Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,940,137	A→G	V159A (GTC→GCC)	hsrA ←	putative transporter HsrA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,940,137	0	A	G	100.0%	242.0 / NA	66	V159A (GTC→GCC)	hsrA	putative transporter HsrA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (44/22); total (44/22)

AAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAGGCATCATC  >  NC_000913/3940001‑3940268

aaaCAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCa                                                                                                                                  >  2:244659/1‑140 (MQ=255)

 aaCAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAg                                                                                                                                 >  1:336758/1‑140 (MQ=255)

  aCAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGc                                                                                                                                >  2:258459/1‑140 (MQ=255)

   cAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCa                                                                                                                               <  1:99062/140‑1 (MQ=255)

     gCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCAcg                                                                                                                             <  1:822359/140‑1 (MQ=255)

      cAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCAcgc                                                                                                                            >  1:127684/1‑140 (MQ=255)

                 tGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACg                                                                                                                 <  1:1209215/140‑1 (MQ=255)

                      tCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGcc                                                                                                            >  1:1347028/1‑140 (MQ=255)

                              gcgcCGTGCGGTGGCGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACCCCGCCAAGAACGGGGCCTAAAATTg                                                                                                    >  2:1399568/1‑140 (MQ=255)

                              gCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTg                                                                                                    >  2:979575/1‑140 (MQ=255)

                                gtcgtGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGc                                                                                                  <  2:127684/140‑1 (MQ=255)

                                gtcgtGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGc                                                                                                  <  1:667603/140‑1 (MQ=255)

                                    tGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCcca                                                                                              >  1:889853/1‑140 (MQ=255)

                                     gCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccac                                                                                             <  2:1288055/140‑1 (MQ=255)

                                      cGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacc                                                                                            <  1:85449/140‑1 (MQ=255)

                                                   gggCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATgg                                                                               >  1:1225852/1‑140 (MQ=255)

                                                     gCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCg                                                                             >  1:379474/1‑140 (MQ=255)

                                                               gcgcgcGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCa                                                                   <  2:379474/140‑1 (MQ=255)

                                                                      tAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTgg                                                            >  1:946897/1‑140 (MQ=255)

                                                                             ggCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGt                                                     >  1:594608/1‑140 (MQ=255)

                                                                              gCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGtt                                                    >  1:328231/1‑140 (MQ=255)

                                                                               cccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAtt                                                                     >  2:529237/1‑122 (MQ=255)

                                                                               cccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAtt                                                                     <  1:529237/122‑1 (MQ=255)

                                                                               cccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAATAAGTTc                                                   >  2:1219534/1‑140 (MQ=255)

                                                                               cccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTc                                                   >  2:1123078/1‑140 (MQ=255)

                                                                               cccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTc                                                   >  2:625306/1‑140 (MQ=255)

                                                                               cccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTc                                                   >  2:362081/1‑140 (MQ=255)

                                                                               cccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTc                                                   >  1:52315/1‑140 (MQ=255)

                                                                               cccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTc                                                   >  1:291678/1‑140 (MQ=255)

                                                                                ccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCa                                                  <  1:69970/140‑1 (MQ=255)

                                                                                ccGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCa                                                  <  2:1244318/140‑1 (MQ=255)

                                                                                 cGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCAt                                                 >  1:529198/1‑140 (MQ=255)

                                                                                 cGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCAt                                                 >  2:839799/1‑140 (MQ=255)

                                                                                 cGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCAt                                                 >  2:1067127/1‑140 (MQ=255)

                                                                                     aTACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACg                                             >  2:406048/1‑140 (MQ=255)

                                                                                          tATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGAt                                        >  1:25969/1‑140 (MQ=255)

                                                                                            tGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATaa                                      >  2:254747/1‑140 (MQ=255)

                                                                                              gggATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAgc                                    >  2:80898/1‑140 (MQ=255)

                                                                                               ggATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAgcg                                   <  1:912084/140‑1 (MQ=255)

                                                                                                gATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAgcgc                                  >  1:107445/1‑140 (MQ=255)

                                                                                                gATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAgcgc                                  <  2:328231/140‑1 (MQ=255)

                                                                                                gATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAgcgc                                  <  1:237532/140‑1 (MQ=255)

                                                                                                  tatTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAgcgcgc                                >  2:312376/1‑140 (MQ=255)

                                                                                                  tatTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAgcgcgc                                >  1:104397/1‑140 (MQ=255)

                                                                                                   atTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCa                               >  1:1037447/1‑140 (MQ=255)

                                                                                                   atTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCa                               >  2:84503/1‑140 (MQ=255)

                                                                                                   atTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCa                               >  2:820350/1‑140 (MQ=255)

                                                                                                    ttGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAg                              >  2:1109748/1‑140 (MQ=255)

                                                                                                      gATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTa                            >  1:650684/1‑140 (MQ=255)

                                                                                                           aaaaTATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAATAAGTTCATTACGAGGATAAGCGCGCAGTAAGGcc                       <  1:1219534/140‑1 (MQ=255)

                                                                                                           aaaaTATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGcc                       <  2:52315/140‑1 (MQ=255)

                                                                                                             aaTATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAg                     <  1:979575/140‑1 (MQ=255)

                                                                                                             aaTATCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAg                     <  1:84503/140‑1 (MQ=255)

                                                                                                               tatCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGcc                   <  2:1049016/140‑1 (MQ=255)

                                                                                                                 tCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGc                        <  1:738960/133‑1 (MQ=255)

                                                                                                                 tCCAGTGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGc                        >  2:738960/1‑133 (MQ=255)

                                                                                                                      tGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAAc            >  2:577049/1‑140 (MQ=255)

                                                                                                                      tGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAAc            >  1:295547/1‑140 (MQ=255)

                                                                                                                      tGCCAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAAc            >  2:349582/1‑140 (MQ=255)

                                                                                                                         cAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAgg         >  1:50042/1‑140 (MQ=255)

                                                                                                                         cAGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAgg         <  2:15402/140‑1 (MQ=255)

                                                                                                                          aGGTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAGGc        <  2:946897/140‑1 (MQ=255)

                                                                                                                           ggTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAGGca       >  2:449272/1‑140 (MQ=255)

                                                                                                                           ggTTGCCCAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAGGca       >  1:110289/1‑140 (MQ=255)

                                                                                                                                cccAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATGCTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAGGcatcatc  >  1:560604/1‑140 (MQ=255)

                                                                                                                                cccAGGTGGCCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAGGcatcatc  >  1:1059243/1‑140 (MQ=255)

AAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGCATATGTTTGCGCGCGTAAAGAAGGCCCGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGCCGAGCAACAGGCATCATC  >  NC_000913/3940001‑3940268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A