Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,950,707	G→T	pseudogene (148/1645 nt)	ilvG →	acetolactate synthase II subunit IlvG, N‑terminal fragment (pseudogene)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,950,707	0	G	T	100.0%	458.4 / NA	130	pseudogene (148/1645 nt)	ilvG	acetolactate synthase II subunit IlvG, N‑terminal fragment (pseudogene)
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (74/56); total (74/56)

Only 100 of 134 total aligned reads displayed.

ACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTGCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATCCCTGTTGTTGCCAT  >  NC_000913/3950571‑3950843

acaGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCgg                                                                                                                                       >  2:329939/1‑140 (MQ=255)

      ggtggtACATGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATgg                                                                                                                                 <  1:694774/140‑1 (MQ=255)

            ccATGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGGAATGGCGGCTa                                                                                                                           <  2:1395511/139‑1 (MQ=255)

            aCATGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTa                                                                                                                           >  1:400175/1‑140 (MQ=255)

            aCATGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTa                                                                                                                           <  2:1106097/140‑1 (MQ=255)

             cATGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTAt                                                                                                                          <  1:1011991/140‑1 (MQ=255)

              aTGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTa                                                                                                                           >  2:876882/1‑138 (MQ=255)

                gCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCgg                                                                                                                       >  1:1399681/1‑140 (MQ=255)

                gCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCgg                                                                                                                       >  1:1289630/1‑140 (MQ=255)

                gCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCgg                                                                                                                       >  1:78681/1‑140 (MQ=255)

                 cGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGt                                                                                                                      >  2:1196194/1‑140 (MQ=255)

                  gTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGtt                                                                                                                     >  2:1354656/1‑140 (MQ=255)

                  gTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGtt                                                                                                                     >  1:326149/1‑140 (MQ=255)

                    tGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTAt                                                                                                                   >  2:1144987/1‑140 (MQ=255)

                    tGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTAt                                                                                                                   >  1:1374431/1‑140 (MQ=255)

                     gCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATg                                                                                                                  >  1:1038675/1‑140 (MQ=255)

                                gtgtGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTAcc                                                                                                       >  1:1310845/1‑140 (MQ=255)

                                       cacCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCaaaa                                                                                                <  1:73808/140‑1 (MQ=255)

                                        acCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAAc                                                                                               <  1:286047/140‑1 (MQ=255)

                                         ccGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCaaaa                                                                                                <  1:153041/138‑1 (MQ=255)

                                         ccGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACt                                                                                              >  2:486951/1‑140 (MQ=255)

                                         ccGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACt                                                                                              >  2:706087/1‑140 (MQ=255)

                                          cGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTg                                                                                             >  1:842512/1‑140 (MQ=255)

                                           gTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTgg                                                                                            >  1:146906/1‑140 (MQ=255)

                                           gTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTgg                                                                                            >  2:320461/1‑140 (MQ=255)

                                           gTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTgg                                                                                            <  2:842512/140‑1 (MQ=255)

                                            ttttCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGc                                                                                           <  1:670951/140‑1 (MQ=255)

                                             tttCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGGTATGCTCGTGCTACCGGCAAAACTGGCg                                                                                          >  1:1048745/1‑140 (MQ=255)

                                               tCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCaaaa                                                                                                <  2:303473/132‑1 (MQ=255)

                                                cGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCgtat                                                                                       <  2:1399681/140‑1 (MQ=255)

                                                  gTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCgtatgt                                                                                     <  2:910328/140‑1 (MQ=255)

                                                  gTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCgtatgt                                                                                     >  2:589526/1‑140 (MQ=255)

                                                      tCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCg                                                                                 <  2:1289630/140‑1 (MQ=255)

                                                       ccGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGc                                                                                <  1:1196194/140‑1 (MQ=255)

                                                       ccGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGc                                                                                <  2:1374431/140‑1 (MQ=255)

                                                       ccGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGc                                                                                <  1:147257/140‑1 (MQ=255)

                                                       ccGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTAAGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGc                                                                                <  2:118006/140‑1 (MQ=255)

                                                           gTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACg                                                                            >  2:1052389/1‑140 (MQ=255)

                                                               cgcAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTg                                                                        >  1:879935/1‑140 (MQ=255)

                                                               cgcAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTg                                                                        >  1:739402/1‑140 (MQ=255)

                                                               cgcAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTg                                                                        >  2:153235/1‑140 (MQ=255)

                                                                 cAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGt                                                                      >  2:202944/1‑140 (MQ=255)

                                                                    ttATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCg                                                                   >  1:1251517/1‑140 (MQ=255)

                                                                      aTGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCggg                                                                 <  2:879935/140‑1 (MQ=255)

                                                                      aTGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCggg                                                                 <  1:1201244/140‑1 (MQ=255)

                                                                      aTGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCggg                                                                 <  1:982382/140‑1 (MQ=255)

                                                                       tGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGgc                                                                >  1:400367/1‑140 (MQ=255)

                                                                              ttACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGcaacca                                                         <  2:400175/140‑1 (MQ=255)

                                                                              ttACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGcaacca                                                         >  1:701534/1‑140 (MQ=255)

                                                                                       aTTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATaa                                                >  2:520554/1‑140 (MQ=255)

                                                                                           tATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCgg                                            >  1:1260329/1‑140 (MQ=255)

                                                                                              gACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCt                                         >  2:156730/1‑140 (MQ=255)

                                                                                                cggcggCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTg                                       >  1:960339/1‑140 (MQ=255)

                                                                                                cggcggCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTg                                       >  1:1100540/1‑140 (MQ=255)

                                                                                                cggcggCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTg                                       >  1:1086635/1‑140 (MQ=255)

                                                                                                cggcggCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTg                                       >  2:1188853/1‑140 (MQ=255)

                                                                                                 ggcggcGTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGc                                      >  2:61979/1‑140 (MQ=255)

                                                                                                  gcggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCg                                     >  2:722511/1‑140 (MQ=255)

                                                                                                  gcggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCg                                     >  2:150923/1‑140 (MQ=255)

                                                                                                   cggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTCTCGGTTATGCTCGTTGTACCGGCAAAACTGGCGGATGTATCGCCACGTCTGGTTCCGGCGCAACCAACCCGTTAACCGGGCTTGCgg                                    >  2:1379490/1‑140 (MQ=255)

                                                                                                   cggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCgg                                    >  1:1179318/1‑140 (MQ=255)

                                                                                                   cggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCgg                                    >  1:846719/1‑140 (MQ=255)

                                                                                                   cggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCgg                                    >  1:327479/1‑140 (MQ=255)

                                                                                                   cggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCgg                                    >  1:821995/1‑140 (MQ=255)

                                                                                                   cggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCgg                                    >  1:843114/1‑140 (MQ=255)

                                                                                                   cggcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGGATCCCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCgg                                    >  2:838152/1‑140 (MQ=255)

                                                                                                     gcgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGAc                                  >  2:497932/1‑140 (MQ=255)

                                                                                                      cgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACg                                 <  2:503997/140‑1 (MQ=255)

                                                                                                      cgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACg                                 <  1:706087/140‑1 (MQ=255)

                                                                                                      cgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACg                                 <  1:1188853/140‑1 (MQ=255)

                                                                                                      cgTGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGCCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACg                                 <  2:1310845/140‑1 (MQ=255)

                                                                                                        tGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGcc                               >  2:402251/1‑139 (MQ=255)

                                                                                                        tGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCa                               <  1:1384566/140‑1 (MQ=255)

                                                                                                        tGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCa                               <  2:218670/140‑1 (MQ=255)

                                                                                                        tGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCa                               <  2:835020/140‑1 (MQ=255)

                                                                                                        tGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCa                               <  2:216974/140‑1 (MQ=255)

                                                                                                        tGGAGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCa                               <  2:1215815/140‑1 (MQ=255)

                                                                                                           aGCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTg                            >  1:433068/1‑140 (MQ=255)

                                                                                                            gCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGt                           <  2:41172/140‑1 (MQ=255)

                                                                                                            gCACTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGCATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGt                           <  2:1260329/140‑1 (MQ=255)

                                                                                                              aCTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTa                         <  2:960339/140‑1 (MQ=255)

                                                                                                              aCTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTa                         <  1:202944/140‑1 (MQ=255)

                                                                                                              aCTTGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTa                         <  1:722511/140‑1 (MQ=255)

                                                                                                                ttGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGa                       >  2:736926/1‑140 (MQ=255)

                                                                                                                ttGCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTAATAACCGGGCTTGCGGACGCACTGTTAGa                       <  1:215880/140‑1 (MQ=255)

                                                                                                                  gCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGa                                   <  2:1318154/126‑1 (MQ=255)

                                                                                                                  gCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGa                                   >  1:1318154/1‑126 (MQ=255)

                                                                                                                  gCTATGCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGAtt                     >  1:653779/1‑140 (MQ=255)

                                                                                                                       gCCGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATc                >  1:1034751/1‑140 (MQ=255)

                                                                                                                        ccGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATcc               <  1:803765/140‑1 (MQ=255)

                                                                                                                        ccGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATcc               <  2:78681/140‑1 (MQ=255)

                                                                                                                        ccGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATcc               <  1:163939/140‑1 (MQ=255)

                                                                                                                        ccGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATcc               <  1:1379490/140‑1 (MQ=255)

                                                                                                                        ccGACATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCAGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATcc               >  2:1238088/1‑140 (MQ=255)

                                                                                                                           aCATGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATCCCtg            <  2:1100540/140‑1 (MQ=255)

                                                                                                                              tGAGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATCCCtgttg         <  2:287526/140‑1 (MQ=255)

                                                                                                                                aGCAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATATATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATCCCTgttgtt       >  1:892421/1‑140 (MQ=255)

                                                                                                                                  cAGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATCCCtgtt          >  1:296196/1‑135 (MQ=255)

                                                                                                                                   aGGGTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATCCCTGTTGTTGcc    <  1:362909/140‑1 (MQ=255)

                                                                                                                                     ggTTCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATCCCTGTTGTTGCCAt  <  1:520554/140‑1 (MQ=255)

ACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTTTCGGTTATCCGGGTGGCGCAATTATGCCGGTTTACGATGCATTGTATGACGGCGGCGTGGAGCACTTGCTATGCCGACATGAGCAGGGTGCGGCAATGGCGGCTATCGGTTATGCTCGTGCTACCGGCAAAACTGGCGTATGTATCGCCACGTCTGGTCCGGGCGCAACCAACCTGATAACCGGGCTTGCGGACGCACTGTTAGATTCCATCCCTGTTGTTGCCAT  >  NC_000913/3950571‑3950843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A