Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,964,151 C→T A27T (GCT→ACT)  gpp ← guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,964,1510CT100.0% 480.5 / NA 133A27T (GCT→ACT) gppguanosine‑5'‑triphosphate,3'‑diphosphate phosphatase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (57/76);  total (57/76)

Only 100 of 133 total aligned reads displayed.

TTGCAGACGTTCAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGCCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTGAATCACT  >  NC_000913/3964014‑3964285
                                                                                                                                         |                                                                                                                                      
   cAGACGTTCAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCt                                                                                                                                   <  2:1080099/140‑1 (MQ=255)
    aGACGTTCAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTc                                                                                                                                  >  2:221210/1‑140 (MQ=255)
    aGACGTTCAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTc                                                                                                                                  >  1:1207311/1‑140 (MQ=255)
      aCGTTCAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTcgc                                                                                                                                >  1:547435/1‑140 (MQ=255)
        gTTCAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCgcgc                                                                                                                              >  1:1001389/1‑140 (MQ=255)
        gTTCAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCgcgc                                                                                                                              <  1:929240/140‑1 (MQ=255)
           cAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGcaca                                                                                                                           <  2:1345311/140‑1 (MQ=255)
           cAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGcaca                                                                                                                           >  2:408218/1‑140 (MQ=255)
           cAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATACTTCCAGTCACCTCGCGcaca                                                                                                                           >  2:841850/1‑140 (MQ=255)
            aGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACaa                                                                                                                          >  1:1204412/1‑140 (MQ=255)
             gCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAAc                                                                                                                         <  2:1378034/140‑1 (MQ=255)
             gCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAAc                                                                                                                         <  2:699751/140‑1 (MQ=255)
                aaCAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAg                                                                                                                      <  1:902364/140‑1 (MQ=255)
                aaCAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAg                                                                                                                      <  1:1097971/140‑1 (MQ=255)
                  cAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCa                                                                                                                    <  2:767067/140‑1 (MQ=255)
                    ggCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTcgcg                                                                                                                               <  2:1260609/127‑1 (MQ=255)
                    ggCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCata                                                                                                                  >  2:133080/1‑140 (MQ=255)
                    ggCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCata                                                                                                                  >  2:597626/1‑140 (MQ=255)
                     gcgcAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCatat                                                                                                                 <  2:503478/140‑1 (MQ=255)
                      cgcAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATg                                                                                                                >  1:1335769/1‑140 (MQ=255)
                        cAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGaa                                                                                                              <  2:108396/140‑1 (MQ=255)
                         aaaCATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGaaa                                                                                                             <  2:289278/140‑1 (MQ=255)
                               tGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAAc                                                                                                                         >  1:705851/1‑122 (MQ=255)
                               tGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAAc                                                                                                                         <  2:705851/122‑1 (MQ=255)
                               tGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCatat                                                                                                                 <  1:1122027/130‑1 (MQ=255)
                               tGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCatat                                                                                                                 >  2:1122027/1‑130 (MQ=255)
                               tGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTAtt                                                                                                       >  2:626771/1‑140 (MQ=255)
                                   aaCCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGaa                                                                                                   >  1:861978/1‑140 (MQ=255)
                                   aaCCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGaa                                                                                                   <  2:861978/140‑1 (MQ=255)
                                      cgcgCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCg                                                                                                <  1:1112304/140‑1 (MQ=255)
                                       gcgcTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCga                                                                                               >  1:509690/1‑140 (MQ=255)
                                       gcgcTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCg                                                                                                <  1:598719/139‑1 (MQ=255)
                                          cTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCg                                                                                                <  2:1048807/136‑1 (MQ=255)
                                           tCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATc                                                                                           <  1:239110/140‑1 (MQ=255)
                                           tCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATc                                                                                           <  1:1047707/140‑1 (MQ=255)
                                             cATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCaa                                                                                         <  1:221210/140‑1 (MQ=255)
                                             cATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCaa                                                                                         <  1:1032033/140‑1 (MQ=255)
                                             cATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCaa                                                                                         <  1:1246239/140‑1 (MQ=255)
                                               ttGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATg                                                                                       >  2:323448/1‑140 (MQ=255)
                                                tGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATgg                                                                                      >  2:244925/1‑140 (MQ=255)
                                                tGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATgg                                                                                      <  1:626771/140‑1 (MQ=255)
                                                  cTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCt                                                                                    <  2:474879/140‑1 (MQ=255)
                                                  cTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCt                                                                                    <  1:1209103/140‑1 (MQ=255)
                                                       ttGGAGAGGGCATTTTCGCTATTCAGGTCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATa                                                                               <  1:293869/140‑1 (MQ=255)
                                                       ttGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATgg                                                                                      >  2:762025/1‑133 (MQ=255)
                                                       ttGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATgg                                                                                      <  1:762025/133‑1 (MQ=255)
                                                       ttGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATa                                                                               <  2:547435/140‑1 (MQ=255)
                                                       ttGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATa                                                                               >  1:357474/1‑140 (MQ=255)
                                                          gagaGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAg                                                                            >  2:466636/1‑140 (MQ=255)
                                                            gagGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGcg                                                                          >  2:341532/1‑140 (MQ=255)
                                                             agGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGcga                                                                         <  1:484495/140‑1 (MQ=255)
                                                               ggCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGcgacg                                                                       >  2:346654/1‑140 (MQ=255)
                                                               ggCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGcgacg                                                                       >  1:1389954/1‑140 (MQ=255)
                                                               ggCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGcgacg                                                                       >  2:100749/1‑140 (MQ=255)
                                                               ggCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGcgacg                                                                       >  1:94483/1‑140 (MQ=255)
                                                               ggCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGcgacg                                                                       >  2:931113/1‑140 (MQ=255)
                                                               ggCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGAACAATGGCTGCATACAGcgacg                                                                       <  2:1001389/140‑1 (MQ=255)
                                                                 cATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAg                                                                     >  1:1405683/1‑140 (MQ=255)
                                                                   ttttCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGt                                                                   <  1:341532/140‑1 (MQ=255)
                                                                   ttttCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGt                                                                   <  1:340678/140‑1 (MQ=255)
                                                                   ttttCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGt                                                                   <  1:931113/140‑1 (MQ=255)
                                                                    tttCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTg                                                                  <  2:184526/140‑1 (MQ=255)
                                                                     ttCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTgg                                                                 <  1:133080/140‑1 (MQ=255)
                                                                        gCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAAc                                                              <  1:100749/140‑1 (MQ=255)
                                                                        gCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAAc                                                              <  2:901689/140‑1 (MQ=255)
                                                                            ttCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGGAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCAt                                                          <  2:701878/140‑1 (MQ=255)
                                                                            ttCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCAt                                                          <  1:323448/140‑1 (MQ=255)
                                                                                 gCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATActct                                                     >  2:668677/1‑140 (MQ=255)
                                                                                  ccAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCtt                                                    <  1:156956/140‑1 (MQ=255)
                                                                                   cagcagCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTc                                                   <  2:1405683/140‑1 (MQ=255)
                                                                                   cagcagCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTc                                                   <  1:658660/140‑1 (MQ=255)
                                                                                   cagcagCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTc                                                   <  1:677668/140‑1 (MQ=255)
                                                                                      cagcCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAAc                                                              >  2:1159831/1‑126 (MQ=255)
                                                                                      cagcCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAAc                                                              <  1:1159831/126‑1 (MQ=255)
                                                                                      cagcCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATc                                                >  2:1233322/1‑140 (MQ=255)
                                                                                      cagcCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATc                                                >  2:5014/1‑140 (MQ=255)
                                                                                      cagcCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATc                                                >  1:46733/1‑140 (MQ=255)
                                                                                         ccAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCtt                                             <  1:806914/140‑1 (MQ=255)
                                                                                         ccAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCtt                                             >  2:259174/1‑140 (MQ=255)
                                                                                            gACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATACTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCaa                                          <  1:841850/140‑1 (MQ=255)
                                                                                             aCGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAATCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGTCGAGGTGGAACCCATACTCTTCATCCTTCAAt                                         <  2:1267477/140‑1 (MQ=255)
                                                                                                  cTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGtc                                    <  1:545649/140‑1 (MQ=255)
                                                                                                   tttGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAAt                                         >  1:679811/1‑134 (MQ=255)
                                                                                                   tttGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAAt                                         <  2:679811/134‑1 (MQ=255)
                                                                                                   tttGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGtct                                   >  1:117656/1‑140 (MQ=255)
                                                                                                   tttGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGtct                                   <  2:1389954/140‑1 (MQ=255)
                                                                                                          tttATTCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGtt                            <  2:117656/140‑1 (MQ=255)
                                                                                                               tCGCGTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTg                       >  1:596298/1‑140 (MQ=255)
                                                                                                                cgcgTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGc                      <  2:596298/140‑1 (MQ=255)
                                                                                                                 gcgTCAGCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCa                     >  1:1265765/1‑140 (MQ=255)
                                                                                                                       gCGTCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCttt               <  2:389188/140‑1 (MQ=255)
                                                                                                                          tCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCAc            <  1:259174/140‑1 (MQ=255)
                                                                                                                          tCTGGATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCAc            <  2:933862/140‑1 (MQ=255)
                                                                                                                             ggATGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTg         >  2:813044/1‑140 (MQ=255)
                                                                                                                               aTGCTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATGCTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTGaa       <  1:466636/140‑1 (MQ=255)
                                                                                                                                  cTTCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTGAATCa    >  1:758452/1‑140 (MQ=255)
                                                                                                                                    tCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTGaa       <  1:184562/135‑1 (MQ=255)
                                                                                                                                    tCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTGaa       >  2:184562/1‑135 (MQ=255)
                                                                                                                                    tCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTGAATCACt  <  2:758452/140‑1 (MQ=255)
                                                                                                                                    tCCAGTCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTGAATCACt  <  2:1335769/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
TTGCAGACGTTCAGCAAACAGGCGCAAACATTGCCAACCGCGCTCCATTGCTTCATTGGAGAGGGCATTTTCGCTATTCAGGCCAGCAGCCAGACGCACTTTGCGTTTTATTCGCGTCAGCGTCTGGATGCTTCCAGCCACCTCGCGCACAACCAGCATATGAAAACTATTCGAACCGAGATCAATGGCTGCATACAGCGACGAGGTGGAACCCATACTCTTCATCCTTCAATCTGTCTCTGTGTTGGCTGCATTCTTTCACCTGAATCACT  >  NC_000913/3964014‑3964285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A