Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,988,251 C→T A272A (GCG→GCA)  hemX ← PF04375 family protein HemX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,988,2510CT100.0% 343.5 / NA 96A272A (GCG→GCA) hemXPF04375 family protein HemX
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (57/39);  total (57/39)

CGTAGTAAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGCGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATC  >  NC_000913/3988115‑3988386
                                                                                                                                        |                                                                                                                                       
cGTAGTAAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCt                                                                                                                                      >  2:1207812/1‑140 (MQ=255)
cGTAGTAAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCt                                                                                                                                      >  2:1373767/1‑140 (MQ=255)
cGTAGTAAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCt                                                                                                                                      <  2:1070050/140‑1 (MQ=255)
  tagtaAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTaa                                                                                                                                    >  2:1269376/1‑140 (MQ=255)
  tagtaAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTaa                                                                                                                                    >  2:834517/1‑140 (MQ=255)
  tagtaAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTaa                                                                                                                                    <  1:857037/140‑1 (MQ=255)
  tagtaAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTaa                                                                                                                                    >  2:22720/1‑140 (MQ=255)
    gtaAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACa                                                                                                                                  >  1:36415/1‑140 (MQ=255)
     taAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAg                                                                                                                                 >  1:4120/1‑140 (MQ=255)
       aGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAAc                                                                                                                                   >  1:297739/1‑136 (MQ=255)
       aGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAAc                                                                                                                                   <  2:297739/136‑1 (MQ=255)
       aGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCg                                                                                                                               >  2:739900/1‑140 (MQ=255)
         cACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGt                                                                                                                             >  2:1083558/1‑140 (MQ=255)
           cGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAc                                                                                                                           >  2:908340/1‑140 (MQ=255)
            gTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcg                                                                                                                          >  2:364994/1‑140 (MQ=255)
            gTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcg                                                                                                                          >  1:781102/1‑140 (MQ=255)
            gTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcg                                                                                                                          >  2:851135/1‑140 (MQ=255)
             tACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcgg                                                                                                                         >  2:278021/1‑140 (MQ=255)
             tACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcgg                                                                                                                         >  2:1146710/1‑140 (MQ=255)
               cccAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcggcg                                                                                                                       <  2:1106537/140‑1 (MQ=255)
               cccAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcggcg                                                                                                                       >  1:1106537/1‑140 (MQ=255)
               cccAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcggcg                                                                                                                       >  1:369182/1‑140 (MQ=255)
                 cAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGgt                                                                                                                     <  1:355445/140‑1 (MQ=255)
                    gTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcgg                                                                                                                         <  2:273378/133‑1 (MQ=255)
                    gTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcgg                                                                                                                         >  1:273378/1‑133 (MQ=255)
                      ggAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGtcat                                                                                                                >  2:1235919/1‑140 (MQ=255)
                       gagaCGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGtcatc                                                                                                               >  1:441182/1‑140 (MQ=255)
                       gagaCGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGtcatc                                                                                                               >  1:633844/1‑140 (MQ=255)
                       gagaCGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGtcatc                                                                                                               >  2:1098750/1‑140 (MQ=255)
                       gagaCGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGtcatc                                                                                                               >  1:167358/1‑140 (MQ=255)
                        agaCGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGtcatca                                                                                                              <  1:193919/140‑1 (MQ=255)
                          aCGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCacg                                                                                                            >  1:1381163/1‑140 (MQ=255)
                          aCGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCacg                                                                                                            >  1:64125/1‑140 (MQ=255)
                              tctcCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcggcg                                                                                                                       <  2:216712/125‑1 (MQ=255)
                              tctcCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTAcggcg                                                                                                                       >  1:216712/1‑125 (MQ=255)
                              tctcCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACgg                                                                                                        >  2:462659/1‑140 (MQ=255)
                               ctcCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGc                                                                                                       >  1:822376/1‑140 (MQ=255)
                               ctcCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACCACCGc                                                                                                       >  2:1317229/1‑140 (MQ=255)
                                   aGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAAt                                                                                                   <  1:462659/140‑1 (MQ=255)
                                   aGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAAt                                                                                                   <  1:1171103/140‑1 (MQ=255)
                                       ccTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCg                                                                                                      <  2:1390106/133‑1 (MQ=255)
                                       ccTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCg                                                                                                      >  1:1390106/1‑133 (MQ=255)
                                       ccTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTa                                                                                               >  2:1002876/1‑140 (MQ=255)
                                          ggCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATg                                                                                            <  1:1207812/140‑1 (MQ=255)
                                            cGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGaa                                                                                          <  2:822376/140‑1 (MQ=255)
                                               tAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGtt                                                                                       <  2:781102/140‑1 (MQ=255)
                                                    ctctTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCa                                                                                  <  2:167358/140‑1 (MQ=255)
                                                            ggTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTc                                                                          >  2:1143187/1‑140 (MQ=255)
                                                             gTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCt                                                                         >  1:28727/1‑140 (MQ=255)
                                                                aCGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGcc                                                                      <  2:36415/140‑1 (MQ=255)
                                                                aCGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGcc                                                                      <  1:1146710/140‑1 (MQ=255)
                                                                aCGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGcc                                                                      <  2:4120/140‑1 (MQ=255)
                                                                 cgcgGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCa                                                                     >  2:82091/1‑140 (MQ=255)
                                                                  gcgGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAg                                                                    <  2:1381163/140‑1 (MQ=255)
                                                                  gcgGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAg                                                                    <  1:1373767/140‑1 (MQ=255)
                                                                      tACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCttt                                                                >  2:539304/1‑140 (MQ=255)
                                                                          gCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGGATCGTTATGAAATTGTGCCTAAAGTTCTGCCAGCctttttt                                                            >  2:1401496/1‑139 (MQ=255)
                                                                            ttGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTATGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCa                                                          <  1:1235919/140‑1 (MQ=255)
                                                                            ttGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCa                                                          <  2:64125/140‑1 (MQ=255)
                                                                            ttGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCa                                                          <  1:22720/140‑1 (MQ=255)
                                                                                gctgcGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTTATCACCACGGCGAATCGTTATGAAGTTTTCCATAAAGTTTTGCCAGCTTTTTTGCAGAtt                                                      >  2:808189/1‑140 (MQ=255)
                                                                                gctgcGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGAtt                                                      >  1:607833/1‑140 (MQ=255)
                                                                                gctgcGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTAATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAAAGAAGTTGTCCATAAAGTTTTGCCAGCCTTTTTTTAGAtt                                                      >  2:952927/1‑140 (MQ=255)
                                                                                     gACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGATGTCCCTAAAGTTTTGCCAGCTTTTTTTCAGATTGATAc                                                 >  2:1280863/1‑140 (MQ=255)
                                                                                        cagcagGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGcc                                              <  1:908340/140‑1 (MQ=255)
                                                                                         agcagGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCa                                             >  2:1315538/1‑140 (MQ=255)
                                                                                                    gCGAATATTTTCGCGCAGATAGATATCCTAATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATgg                                  <  1:952927/140‑1 (MQ=255)
                                                                                                     cGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGa                                 >  2:1161924/1‑140 (MQ=255)
                                                                                                     cGAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGa                                 >  1:54022/1‑140 (MQ=255)
                                                                                                      gAATATTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGaa                                <  1:942980/140‑1 (MQ=255)
                                                                                                        atatTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATgg                                  <  2:754713/136‑1 (MQ=255)
                                                                                                        atatTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATgg                                  >  1:754713/1‑136 (MQ=255)
                                                                                                        atatTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGGGTCATCACCACGGCGAATAGGAATGAAGTTTTCCCTAAAGTTTTGCCCGCTTTTTTTTAGATTGATACGCCATTTCCTGTTGGGAcg                              >  2:487574/1‑139 (MQ=255)
                                                                                                         tatTTTCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTg                             <  2:54022/140‑1 (MQ=255)
                                                                                                           ttttCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGa                           <  1:1002876/140‑1 (MQ=255)
                                                                                                           ttttCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGa                           <  1:739900/140‑1 (MQ=255)
                                                                                                            tttCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGaa                          <  2:441182/140‑1 (MQ=255)
                                                                                                             ttCGCGCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGaaa                         <  1:1098750/140‑1 (MQ=255)
                                                                                                               cgcgCAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGc                       >  2:118321/1‑140 (MQ=255)
                                                                                                                 cgcAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGctc                     >  1:1207514/1‑140 (MQ=255)
                                                                                                                   cAGATAGATATCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCtt                   <  1:1315538/140‑1 (MQ=255)
                                                                                                                     gatagataTCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCa                 <  1:1269376/140‑1 (MQ=255)
                                                                                                                      atagataTCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCAc                <  1:834517/140‑1 (MQ=255)
                                                                                                                      atagataTCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCAc                <  1:851135/140‑1 (MQ=255)
                                                                                                                      atagataTCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCAc                >  1:462356/1‑140 (MQ=255)
                                                                                                                         gataTCCTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGt             <  2:607833/140‑1 (MQ=255)
                                                                                                                              ccTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCAc                <  2:331014/132‑1 (MQ=255)
                                                                                                                              ccTGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCAc                >  1:331014/1‑132 (MQ=255)
                                                                                                                                tGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATc      >  2:542484/1‑140 (MQ=255)
                                                                                                                                tGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATc      >  1:54379/1‑140 (MQ=255)
                                                                                                                                tGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAACCTTTTTTCAGAATGATACGCCATTCGCTGAAGGAACCGGAAAGCTTTTCACCCTCTGTATc      >  2:71171/1‑140 (MQ=255)
                                                                                                                                tGATTTGGTGCTAACAGCGGTACGGCGGTGTCATCACCACGGGGATTGGTAATGAAAGTTTCCATAAAGCTCTGCCAGCTTTTTTTGAGATTGATAAGCCCTTCTCTGGTGGAACCGGAAAACTCTTCACCCGCTGaaac      >  2:655074/1‑138 (MQ=255)
                                                                                                                                  aTTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCa    >  1:1289060/1‑140 (MQ=255)
                                                                                                                                  aTTTGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCa    >  2:460338/1‑140 (MQ=255)
                                                                                                                                   tttGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCAt   <  1:1143187/140‑1 (MQ=255)
                                                                                                                                    ttGGTGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATc  >  1:821135/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CGTAGTAAGCACGTACCCAGGTGGAGACGTTCTCCAGCGCCTGGCGATAAGTCTCTTCCTGGTGACGCGGTACAGCTTGTGCTGCGACCAGCAGGCGAGAGCGAATATTTTCGCGCAGATAGATATCCTGATTTGGCGCTAACAGCGGTACGGCGGTGTCATCACGACGGCGAATCGTAATGAAGTTGTCCATAAAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATC  >  NC_000913/3988115‑3988386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A