Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,174,845	A→C	L61W (TTG→TGG)	coaA ←	pantothenate kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,174,845	0	A	C	100.0%	463.9 / NA	124	L61W (TTG→TGG)	coaA	pantothenate kinase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (62/62); total (62/62)

Only 100 of 126 total aligned reads displayed.

CACGGGCGGTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCAAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGCGGTC  >  NC_000913/4174708‑4174981

cacGGGCGGTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCcaa                                                                                                                                        >  1:833716/1‑140 (MQ=255)

 acGGGCGGTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAAc                                                                                                                                       >  1:202634/1‑140 (MQ=255)

   gggCGGTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGt                                                                                                                                     >  1:818842/1‑140 (MQ=255)

     gCGGTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGa                                                                                                                                   >  2:366502/1‑140 (MQ=255)

     gCGGTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGa                                                                                                                                   >  1:1100752/1‑140 (MQ=255)

       ggTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACa                                                                                                                                 <  2:494369/140‑1 (MQ=255)

       ggTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACa                                                                                                                                 <  1:102556/140‑1 (MQ=255)

        gTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGa                                                                                                                                   <  1:1027636/137‑1 (MQ=255)

        gTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGa                                                                                                                                   >  2:1027636/1‑137 (MQ=255)

        gTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACaa                                                                                                                                >  2:1217021/1‑140 (MQ=255)

         ttGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACa                                                                                                                                 >  2:1347688/1‑138 (MQ=255)

         ttGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACa                                                                                                                                 <  1:1347688/138‑1 (MQ=255)

                  tCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAg                                                                                                                      <  1:788251/140‑1 (MQ=255)

                   ccccACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACa                                                                                                                                 <  2:311211/128‑1 (MQ=255)

                   ccccACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACa                                                                                                                                 >  1:311211/1‑128 (MQ=255)

                   ccccACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGa                                                                                                                     >  1:990058/1‑140 (MQ=255)

                     ccACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGAtc                                                                                                                   <  2:206182/140‑1 (MQ=255)

                      cACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGAtct                                                                                                                  >  2:253380/1‑140 (MQ=255)

                           cgACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCa                                                                                                             >  2:400308/1‑140 (MQ=255)

                           cgACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCa                                                                                                             >  1:456826/1‑140 (MQ=255)

                            gACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGATTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCaa                                                                                                            <  1:1262738/140‑1 (MQ=255)

                             acacTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGAACTCGGCAAc                                                                                                           <  2:1356874/140‑1 (MQ=255)

                               acTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGAAAAAGGTAAATAGATCTCGGCAActt                                                                                                         <  1:682164/140‑1 (MQ=255)

                                 tGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGAtc                                                                                                                   >  1:988055/1‑128 (MQ=255)

                                  gCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAActtctt                                                                                                      <  1:1271928/140‑1 (MQ=255)

                                  gCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAActtctt                                                                                                      <  1:400308/140‑1 (MQ=255)

                                   ccAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACttcttc                                                                                                     >  1:396155/1‑140 (MQ=255)

                                         aTACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACga                                                                                               <  1:366502/140‑1 (MQ=255)

                                         aTACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACga                                                                                               <  1:448096/140‑1 (MQ=255)

                                          tACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACgag                                                                                              <  1:959175/140‑1 (MQ=255)

                                          tACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACgag                                                                                              <  1:1108942/140‑1 (MQ=255)

                                          tACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACgag                                                                                              <  1:26955/140‑1 (MQ=255)

                                           aCTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACgaga                                                                                             >  2:919858/1‑140 (MQ=255)

                                               aTAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATc                                                                                         <  1:1098594/140‑1 (MQ=255)

                                               aTAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATc                                                                                         <  1:1297168/140‑1 (MQ=255)

                                               aTAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATc                                                                                         >  2:548646/1‑140 (MQ=255)

                                               aTAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATc                                                                                         <  1:471426/140‑1 (MQ=255)

                                                tAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCt                                                                                        <  2:187113/140‑1 (MQ=255)

                                                  aTGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTc                                                                                      >  1:691921/1‑140 (MQ=255)

                                                    gTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCAt                                                                                    >  2:545216/1‑140 (MQ=255)

                                                    gTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCAt                                                                                    >  1:991469/1‑140 (MQ=255)

                                                    gTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCAt                                                                                    >  2:1076094/1‑140 (MQ=255)

                                                    gTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCAt                                                                                    >  2:854031/1‑140 (MQ=255)

                                                    gTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCAt                                                                                    >  2:22555/1‑140 (MQ=255)

                                                    gTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCAt                                                                                    >  2:1107432/1‑140 (MQ=255)

                                                     tAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCAtt                                                                                   <  1:253380/140‑1 (MQ=255)

                                                      aaGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTa                                                                                  >  1:39855/1‑140 (MQ=255)

                                                       aGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTaa                                                                                 <  1:320601/140‑1 (MQ=255)

                                                       aGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTaa                                                                                 >  1:1189442/1‑140 (MQ=255)

                                                       aGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTaa                                                                                 >  1:285855/1‑140 (MQ=255)

                                                       aGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTaa                                                                                 <  1:1107432/140‑1 (MQ=255)

                                                       aGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTaa                                                                                 <  2:396155/140‑1 (MQ=255)

                                                       aGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTaa                                                                                 <  2:456826/140‑1 (MQ=255)

                                                         gAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATa                                                                               >  2:982499/1‑140 (MQ=255)

                                                           aTGCGTTGCCCGTTGGTACCAAGAAACTGTTGCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATAcc                                                                             >  1:1178012/1‑140 (MQ=255)

                                                           aTGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATAcc                                                                             >  1:1059400/1‑140 (MQ=255)

                                                            tGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAGGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACgag                                                                                              <  2:384277/122‑1 (MQ=255)

                                                            tGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCt                                                                            >  2:1079467/1‑140 (MQ=255)

                                                             gCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCtt                                                                           >  1:653005/1‑140 (MQ=255)

                                                              cGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCttt                                                                          >  1:565345/1‑140 (MQ=255)

                                                              cGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCttt                                                                          >  1:851114/1‑140 (MQ=255)

                                                                  gCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTgaga                                                                      <  2:1336850/140‑1 (MQ=255)

                                                                    ccGTTGGTACCAAGAAACTGTTGCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACg                                                                    <  2:1178012/140‑1 (MQ=255)

                                                                     cGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACgg                                                                   <  2:653005/140‑1 (MQ=255)

                                                                      gTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACggg                                                                  <  1:1076094/140‑1 (MQ=255)

                                                                            aCCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGAtct                                                            <  2:539519/140‑1 (MQ=255)

                                                                            aCCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGAtct                                                            <  1:888230/140‑1 (MQ=255)

                                                                               aaGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCa                                                          >  1:301425/1‑139 (MQ=255)

                                                                               aaGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCa                                                          <  2:301425/139‑1 (MQ=255)

                                                                                       gTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGAt                                                 <  1:598149/140‑1 (MQ=255)

                                                                                        ttCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGAtct                                                            >  2:453877/1‑128 (MQ=255)

                                                                                        ttCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGAtct                                                            <  1:453877/128‑1 (MQ=255)

                                                                                        ttCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATa                                                <  2:851114/140‑1 (MQ=255)

                                                                                        ttCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATa                                                >  2:1078634/1‑140 (MQ=255)

                                                                                             gAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTc                                           <  2:691921/140‑1 (MQ=255)

                                                                                               aCTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCAt                                         <  2:39855/140‑1 (MQ=255)

                                                                                                  gCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAGCGAGAGATCGTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAgg                                      >  2:1264433/1‑140 (MQ=255)

                                                                                                   ccTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCAt                                         <  2:1268951/136‑1 (MQ=255)

                                                                                                   ccTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCAt                                         >  1:1268951/1‑136 (MQ=255)

                                                                                                   ccTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGt                                     >  1:1194545/1‑140 (MQ=255)

                                                                                                   ccTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGt                                     >  2:935141/1‑140 (MQ=255)

                                                                                                   ccTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAACCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGt                                     >  2:358287/1‑140 (MQ=255)

                                                                                                    cTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTa                                    <  2:417419/140‑1 (MQ=255)

                                                                                                         ggCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGaa                               <  1:919858/140‑1 (MQ=255)

                                                                                                         ggCGCAGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGaa                               <  2:285855/140‑1 (MQ=255)

                                                                                                              aGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGATGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACg                          <  1:548646/140‑1 (MQ=255)

                                                                                                              aGATTCGAGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACg                          <  1:679752/140‑1 (MQ=255)

                                                                                                                     aGCTTATATAGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGACCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCt                   >  1:604685/1‑140 (MQ=255)

                                                                                                                          atataGAAGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCa              >  2:507268/1‑140 (MQ=255)

                                                                                                                                aaGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACg                          >  1:1284776/1‑122 (MQ=255)

                                                                                                                                aaGCTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGTGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACg                          <  2:1284776/122‑1 (MQ=255)

                                                                                                                                 aGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTg       <  2:1189442/140‑1 (MQ=255)

                                                                                                                                 aGTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCATTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTg       <  2:833716/140‑1 (MQ=255)

                                                                                                                                  gTTCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGc      >  1:158336/1‑140 (MQ=255)

                                                                                                                                    tCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGCgg    >  2:161300/1‑140 (MQ=255)

                                                                                                                                    tCAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGCgg    >  1:411258/1‑140 (MQ=255)

                                                                                                                                     cAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGCGGt   >  2:1042266/1‑140 (MQ=255)

                                                                                                                                     cAGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGCGGt   >  2:298562/1‑140 (MQ=255)

                                                                                                                                      aGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGCGGTc  <  1:185100/140‑1 (MQ=255)

                                                                                                                                      aGCCAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGCGGTc  <  2:1194545/140‑1 (MQ=255)

CACGGGCGGTTGTACTTTTCCCCACCGCGACACTGCCAGCAATACTGATAATGTAAGGAATGCGTTGCCCGTTGGTACCAAGAAACTGTTCCAGAACTGCCTGACGGCGCAGATTCGAGCTTATATAGAAGTTCAGCAAACGTGACAAAGGTAAATAGATCTCGGCAACTTCTTCTAACGAGAGATCTTCATTAATACCTTTGAGACGGGCGATCTCATCTTCCGATAACGTCATAGGTACGGAATCACGCAGAGCTGCCCACTGGTTGCGGTC  >  NC_000913/4174708‑4174981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A