Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,246,949	A→G	T56A (ACC→GCC)	malK →	maltose ABC transporter ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,246,949	0	A	G	100.0%	363.7 / NA	99	T56A (ACC→GCC)	malK	maltose ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (42/57); total (42/57)

GCCTGGGGCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGTAGCAGAAAACATGTCATTTGG  >  NC_000913/4246817‑4247079

gCCTGGGGCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAgcgg                                                                                                                             >  2:562009/1‑140 (MQ=255)

gCCTGGGGCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAgcgg                                                                                                                             >  2:288026/1‑140 (MQ=255)

    ggggCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGAc                                                                                                                         <  2:61268/140‑1 (MQ=255)

    ggggCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGAc                                                                                                                         <  1:321564/140‑1 (MQ=255)

    ggggCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGAc                                                                                                                         <  1:898003/140‑1 (MQ=255)

    ggggCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGAc                                                                                                                         <  1:1390171/140‑1 (MQ=255)

    ggggCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGAc                                                                                                                         <  2:843636/140‑1 (MQ=255)

     gggCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGAcc                                                                                                                        >  2:47787/1‑140 (MQ=255)

          aGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTc                                                                                                                   >  2:531479/1‑140 (MQ=255)

          aGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCAACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTc                                                                                                                   >  2:153493/1‑140 (MQ=255)

          aGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGAACGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTc                                                                                                                   >  1:1235691/1‑140 (MQ=255)

           ggTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCa                                                                                                                  >  2:161642/1‑140 (MQ=255)

            gTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCAt                                                                                                                 >  1:730059/1‑140 (MQ=255)

                tGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGt                                                                                                             >  2:301057/1‑140 (MQ=255)

                tGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGt                                                                                                             <  2:1235691/140‑1 (MQ=255)

                 ggTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTg                                                                                                            <  2:355551/140‑1 (MQ=255)

                     tCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGaa                                                                                                        <  2:1073117/140‑1 (MQ=255)

                      cGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGaaa                                                                                                       <  1:1392701/140‑1 (MQ=255)

                       gAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAAc                                                                                                      >  1:25784/1‑140 (MQ=255)

                         aaGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACgg                                                                                                    <  2:201215/140‑1 (MQ=255)

                             tatCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGatga                                                                                                >  2:1378826/1‑140 (MQ=255)

                               tCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGatgaat                                                                                              >  1:222988/1‑140 (MQ=255)

                               tCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGatgaat                                                                                              >  2:158550/1‑140 (MQ=255)

                               tCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGatgaat                                                                                              >  2:967142/1‑140 (MQ=255)

                                  aTCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGac                                                                                           <  1:592665/140‑1 (MQ=255)

                                  aTCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGac                                                                                           <  2:570524/140‑1 (MQ=255)

                                    ctcGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGacac                                                                                         <  2:25784/140‑1 (MQ=255)

                                    ctcGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGacac                                                                                         <  1:1376245/140‑1 (MQ=255)

                                      cGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGatgaa                                                                                               <  1:861635/132‑1 (MQ=255)

                                      cGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGatgaa                                                                                               >  2:861635/1‑132 (MQ=255)

                                      cGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTc                                                                                       >  2:1251579/1‑140 (MQ=255)

                                       gATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTcc                                                                                      <  1:784839/140‑1 (MQ=255)

                                       gATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTcc                                                                                      >  1:747810/1‑140 (MQ=255)

                                       gATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTcc                                                                                      <  2:155416/140‑1 (MQ=255)

                                       gATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTcc                                                                                      >  2:120597/1‑140 (MQ=255)

                                       gATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTcc                                                                                      >  1:412311/1‑140 (MQ=255)

                                       gATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTcc                                                                                      >  2:611447/1‑140 (MQ=255)

                                        atatCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCg                                                                                     >  1:575546/1‑140 (MQ=255)

                                         tatCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGc                                                                                    >  2:888646/1‑140 (MQ=255)

                                         tatCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGc                                                                                    <  2:511002/140‑1 (MQ=255)

                                           tCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCca                                                                                  >  1:154809/1‑140 (MQ=255)

                                             cATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCcagc                                                                                >  1:209816/1‑140 (MQ=255)

                                               tGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCcagcag                                                                              >  2:335146/1‑140 (MQ=255)

                                               tGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCcagcag                                                                              >  1:287462/1‑140 (MQ=255)

                                                   ggTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAAcg                                                                          <  1:1403111/140‑1 (MQ=255)

                                                   ggTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAAcg                                                                          <  2:760724/140‑1 (MQ=255)

                                                   ggTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAAcg                                                                          <  1:706291/140‑1 (MQ=255)

                                                      gAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcgg                                                                       <  1:158550/140‑1 (MQ=255)

                                                      gAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcgg                                                                       <  1:118512/140‑1 (MQ=255)

                                                       aaTTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcggc                                                                      >  2:517486/1‑140 (MQ=255)

                                                       aaTTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcggc                                                                      >  2:131810/1‑140 (MQ=255)

                                                        aTTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcggcg                                                                     <  2:604562/140‑1 (MQ=255)

                                                        aTTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcggcg                                                                     <  2:652179/140‑1 (MQ=255)

                                                        aTTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcggcg                                                                     <  1:1251579/140‑1 (MQ=255)

                                                         ttCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGt                                                                    <  1:562009/140‑1 (MQ=255)

                                                             tggtgTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGt                                                                >  1:315013/1‑140 (MQ=255)

                                                              ggtgTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcggcg                                                                     <  1:97134/134‑1 (MQ=255)

                                                              ggtgTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACgcggcg                                                                     >  2:97134/1‑134 (MQ=255)

                                                              ggtgTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTa                                                               <  1:301057/140‑1 (MQ=255)

                                                              ggtgTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTa                                                               <  1:161642/140‑1 (MQ=255)

                                                              ggtgTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTa                                                               >  1:1000093/1‑140 (MQ=255)

                                                              ggtgTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACGGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTa                                                               <  2:569086/140‑1 (MQ=255)

                                                               gtgtTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTAt                                                              <  1:1135133/140‑1 (MQ=255)

                                                               gtgtTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTAt                                                              >  2:1135133/1‑140 (MQ=255)

                                                                tgtTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATg                                                             <  1:380327/140‑1 (MQ=255)

                                                                 gtTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATgg                                                            <  1:355807/140‑1 (MQ=255)

                                                                 gtTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTAATGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATgg                                                            <  2:681980/140‑1 (MQ=255)

                                                                       cGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTc                                                      >  2:217505/1‑140 (MQ=255)

                                                                        ggACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCa                                                     <  1:712132/140‑1 (MQ=255)

                                                                              tCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTa                                               >  2:121152/1‑140 (MQ=255)

                                                                               cTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAc                                              <  2:1000093/140‑1 (MQ=255)

                                                                               cTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAc                                              <  1:74033/140‑1 (MQ=255)

                                                                                tGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAcg                                             <  1:1249600/140‑1 (MQ=255)

                                                                                tGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAcg                                             >  1:1386950/1‑140 (MQ=255)

                                                                                tGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAcg                                             <  2:412311/140‑1 (MQ=255)

                                                                                tGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAcg                                             <  2:462339/140‑1 (MQ=255)

                                                                                tGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGCATGGTGTTTCAGTCTTAcg                                             >  1:1140555/1‑140 (MQ=255)

                                                                                 ggCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAGCGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAcgc                                            <  1:47787/140‑1 (MQ=255)

                                                                                 ggCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAcgc                                            <  2:154809/140‑1 (MQ=255)

                                                                                    tGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGct                                         <  2:287462/140‑1 (MQ=255)

                                                                                    tGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGct                                         <  1:1378826/140‑1 (MQ=255)

                                                                                    tGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGct                                         <  1:121152/140‑1 (MQ=255)

                                                                                      cGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGctct                                       <  1:288026/140‑1 (MQ=255)

                                                                                        gTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTAt                                     <  2:315013/140‑1 (MQ=255)

                                                                                          aaaTCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAcg                                             >  2:947531/1‑130 (MQ=255)

                                                                                          aaaTCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTAcg                                             <  1:947531/130‑1 (MQ=255)

                                                                                          aaaTCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATcc                                   <  2:730059/140‑1 (MQ=255)

                                                                                           aaTCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATccc                                  <  1:888646/140‑1 (MQ=255)

                                                                                              cGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCAc                               <  1:531479/140‑1 (MQ=255)

                                                                                                  tttACTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGt                           <  1:611447/140‑1 (MQ=255)

                                                                                                     aCTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAg                        >  1:550716/1‑140 (MQ=255)

                                                                                                     aCTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAg                        <  1:120597/140‑1 (MQ=255)

                                                                                                      cTGCGCATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGt                       <  1:8584/140‑1 (MQ=255)

                                                                                                          gcATGATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGTAGCa                   <  1:1322177/140‑1 (MQ=255)

                                                                                                              gATTGCCGGGCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGTAGCAGaaa               >  2:57014/1‑140 (MQ=255)

                                                                                                                      ggCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACAGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGTAGCAGAAAACATGTCa       >  2:970990/1‑140 (MQ=255)

                                                                                                                       gCTTGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGTAGCAGAAAACATGTCAt      <  1:57014/140‑1 (MQ=255)

                                                                                                                          tGAGACGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGTAGCAGAAAACATGTCATTTg   >  2:703391/1‑140 (MQ=255)

                                                                                                                           gagaCGATCGCCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGTAGCAGAAAACATGTCATTTgg  >  2:1164506/1‑140 (MQ=255)

GCCTGGGGCGAGGTCGTGGTATCGAAAGATATCAATCTCGATATCCATGAAGGTGAATTCGTGGTGTTTGTCGGACCGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGACACTCCGCCAGCAGAACGCGGCGTTGGTATGGTGTTTCAGTCTTACGCGCTCTATCCCCACCTGTCAGTAGCAGAAAACATGTCATTTGG  >  NC_000913/4246817‑4247079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A