Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,281,489	T→C	F504L (TTC→CTC)	yjcE →	putative transporter YjcE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,281,489	0	T	C	100.0%	255.0 / NA	70	F504L (TTC→CTC)	yjcE	putative transporter YjcE
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/30); total (40/30)

TACCGAAGAGAATATCGATAACCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCTTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAGGAAAAT  >  NC_000913/4281359‑4281623

tACCGAAGAGAATATCGATAACCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTgg                                                                                                                               <  2:583753/140‑1 (MQ=255)

          aaTATCGATAACCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCg                                                                                                                     >  1:907461/1‑140 (MQ=255)

             atCGATAACCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTc                                                                                                                  >  1:1084987/1‑140 (MQ=255)

                gATAACCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGa                                                                                                               <  1:303227/140‑1 (MQ=255)

                   aaCCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACg                                                                                                            >  2:324134/1‑140 (MQ=255)

                    aCCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGt                                                                                                           >  1:866493/1‑140 (MQ=255)

                    aCCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGt                                                                                                           >  2:1358409/1‑140 (MQ=255)

                     ccAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTg                                                                                                          <  1:741252/140‑1 (MQ=255)

                      cAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGc                                                                                                         <  2:1084/140‑1 (MQ=255)

                        gctgctTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTg                                                                                                       >  1:703467/1‑140 (MQ=255)

                         ctgctTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGa                                                                                                      >  2:1363957/1‑140 (MQ=255)

                                cGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGa                                                                                                               >  1:1412490/1‑124 (MQ=255)

                                cGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGa                                                                                                               <  2:1412490/124‑1 (MQ=255)

                                    ggTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTaccacc                                                                                           >  2:311581/1‑140 (MQ=255)

                                      tCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGCACGTGCTGAACTTTACCACCTg                                                                                         >  2:1372776/1‑140 (MQ=255)

                                      tCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTg                                                                                         >  1:890565/1‑140 (MQ=255)

                                      tCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTg                                                                                         >  1:710739/1‑140 (MQ=255)

                                      tCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTg                                                                                         >  1:1345807/1‑140 (MQ=255)

                                      tCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTg                                                                                         >  1:255709/1‑140 (MQ=255)

                                      tCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTg                                                                                         >  1:144443/1‑140 (MQ=255)

                                        aGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTgcg                                                                                       <  2:907461/140‑1 (MQ=255)

                                           tctcGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGACCCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTgcgcgc                                                                                    <  1:1372776/140‑1 (MQ=255)

                                           tctcGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAGCGTGCTGAACTTTACCACCTgcgcgc                                                                                    <  2:1345807/140‑1 (MQ=255)

                                           tctcGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTgcgcgc                                                                                    <  1:395195/140‑1 (MQ=255)

                                           tctcGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTgcgcgc                                                                                    <  2:697718/140‑1 (MQ=255)

                                             tcGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTgcgcgc                                                                                    >  1:40879/1‑138 (MQ=255)

                                             tcGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTgcgcgc                                                                                    <  2:40879/138‑1 (MQ=255)

                                             tcGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCca                                                                                  >  2:1221110/1‑140 (MQ=255)

                                             tcGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCca                                                                                  <  1:802619/140‑1 (MQ=255)

                                               gcgTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCcaca                                                                                >  2:898350/1‑140 (MQ=255)

                                                cgTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCacac                                                                               <  2:370323/140‑1 (MQ=255)

                                                   cATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACggg                                                                            <  2:1084987/140‑1 (MQ=255)

                                                       ggTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGAt                                                                        <  1:1221110/140‑1 (MQ=255)

                                                               gCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACg                                                                >  2:119404/1‑140 (MQ=255)

                                                                cgtcgtCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGa                                                               >  1:1021616/1‑140 (MQ=255)

                                                                cgtcgtCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGa                                                               >  1:873289/1‑140 (MQ=255)

                                                                  tcgtcgCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGaaa                                                             >  2:538666/1‑140 (MQ=255)

                                                                  tcgtcgCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGaaa                                                             >  1:514442/1‑140 (MQ=255)

                                                                    gtcgCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAGCTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACg                                                           <  1:1358409/140‑1 (MQ=255)

                                                                    gtcgCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACg                                                           <  2:710739/140‑1 (MQ=255)

                                                                     tcgCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACg                                                           <  2:263923/139‑1 (MQ=255)

                                                                     tcgCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACg                                                           >  1:263923/1‑139 (MQ=255)

                                                                                     aaCGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCa                                          <  1:1363957/140‑1 (MQ=255)

                                                                                     aaCGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCa                                          <  1:311581/140‑1 (MQ=255)

                                                                                           gTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGAtct                                    >  2:1187467/1‑140 (MQ=255)

                                                                                           gTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGAtct                                    >  1:994991/1‑140 (MQ=255)

                                                                                              gAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGa                                 <  2:866493/140‑1 (MQ=255)

                                                                                               aaaGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGAt                                <  2:405358/140‑1 (MQ=255)

                                                                                                    tCCGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCt                           >  1:438373/1‑140 (MQ=255)

                                                                                                     ccGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCtt                          >  2:785907/1‑140 (MQ=255)

                                                                                                      cGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGAt                                <  2:1400995/133‑1 (MQ=255)

                                                                                                      cGTGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGAt                                >  1:1400995/1‑133 (MQ=255)

                                                                                                        tGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGa                                 <  2:1322907/130‑1 (MQ=255)

                                                                                                        tGCAGGAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGa                                 >  1:1322907/1‑130 (MQ=255)

                                                                                                             gAAGAGAACCTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGtt                  >  1:1183962/1‑140 (MQ=255)

                                                                                                                     ccTTGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTg          >  1:418532/1‑140 (MQ=255)

                                                                                                                       ttGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGc                     <  1:329777/127‑1 (MQ=255)

                                                                                                                       ttGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGc                     >  2:329777/1‑127 (MQ=255)

                                                                                                                       ttGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAg        <  2:994991/140‑1 (MQ=255)

                                                                                                                       ttGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAg        <  1:1187467/140‑1 (MQ=255)

                                                                                                                       ttGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAg        >  2:179826/1‑140 (MQ=255)

                                                                                                                       ttGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAg        <  1:538666/140‑1 (MQ=255)

                                                                                                                       ttGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAg        <  2:1183962/140‑1 (MQ=255)

                                                                                                                       ttGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTT‑‑‑ACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAGGaa     >  2:1306265/1‑140 (MQ=255)

                                                                                                                        tGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGa         >  1:1355325/1‑138 (MQ=255)

                                                                                                                        tGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGa         <  2:1355325/138‑1 (MQ=255)

                                                                                                                        tGAGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAgg       >  2:870239/1‑140 (MQ=255)

                                                                                                                          aGCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAGGaa     >  2:1390429/1‑140 (MQ=255)

                                                                                                                           gCGTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAGGaaa    >  2:1160142/1‑140 (MQ=255)

                                                                                                                             gTCGCCTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAGGAAAAt  >  1:1016456/1‑140 (MQ=255)

TACCGAAGAGAATATCGATAACCAGCTGCTTACGGAGGTCAGTTCTCGCGTCATTGGTAACCTGCGTCGTCGCGCCGATGGACGTAACGACGTTGAAAGTTCCGTGCAGGAAGAGAACCTTGAGCGTCGCTTCCGTCTGGCGGCATTGCGTTCTGAACGTGCTGAACTTTACCACCTGCGCGCCACACGGGAGATCAGCAACGAAACGCTGCAAAAATTACTGCACGATCTCGATTTGCTTGAAGCGTTGCTAATTGAGGAAAAT  >  NC_000913/4281359‑4281623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A