Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,336,361	A→G	V224A (GTC→GCC)	adiC ←	arginine:agmatine antiporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,336,361	0	A	G	100.0%	374.4 / NA	101	V224A (GTC→GCC)	adiC	arginine:agmatine antiporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (48/53); total (48/53)

Only 100 of 101 total aligned reads displayed.

GCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATGCCGCCA  >  NC_000913/4336226‑4336496

gCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCCCCAATGGTGGCGATAGGGGCAtt                                                                                                                                     <  2:1055435/140‑1 (MQ=255)

   aTCCGTGCGGCATCACCGAACGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCg                                                                                                                                  >  1:1162229/1‑140 (MQ=255)

    tCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGt                                                                                                                                 >  2:794480/1‑140 (MQ=255)

     ccGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGtt                                                                                                                                <  2:452125/140‑1 (MQ=255)

      cGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGttt                                                                                                                               <  2:1161806/140‑1 (MQ=255)

         gCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCgg                                                                                                                            >  2:900472/1‑140 (MQ=255)

             cATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGttt                                                                                                                        >  2:288476/1‑140 (MQ=255)

                          cGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTg                                                                                                           >  1:594907/1‑140 (MQ=255)

                                     cgcgCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAg                                                                                                <  1:810834/140‑1 (MQ=255)

                                       cgcAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGc                                                                                              <  1:794480/140‑1 (MQ=255)

                                       cgcAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGc                                                                                              <  1:332748/140‑1 (MQ=255)

                                                  aTTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCacac                                                                                   <  2:218957/140‑1 (MQ=255)

                                                      gggATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGAt                                                                               >  1:1319461/1‑140 (MQ=255)

                                                      gggATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGAt                                                                               >  1:26986/1‑140 (MQ=255)

                                                      gggATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGAt                                                                               >  1:692039/1‑140 (MQ=255)

                                                      gggATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGAt                                                                               >  1:1094302/1‑140 (MQ=255)

                                                       ggATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATg                                                                              <  1:66463/140‑1 (MQ=255)

                                                        gATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGa                                                                             >  2:756900/1‑140 (MQ=255)

                                                        gATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGa                                                                             <  2:1029250/140‑1 (MQ=255)

                                                         atcatcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGCGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGaa                                                                            <  2:1375078/140‑1 (MQ=255)

                                                          tcatcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAAc                                                                           <  1:76106/140‑1 (MQ=255)

                                                           catcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACg                                                                          >  2:22226/1‑140 (MQ=255)

                                                           catcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACg                                                                          >  2:882785/1‑140 (MQ=255)

                                                           catcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACg                                                                          >  1:404959/1‑140 (MQ=255)

                                                             tcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAc                                                                        >  1:1176372/1‑140 (MQ=255)

                                                             tcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAc                                                                        >  1:1072323/1‑140 (MQ=255)

                                                             tcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAc                                                                        <  2:1344380/140‑1 (MQ=255)

                                                             tcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAc                                                                        >  1:79840/1‑140 (MQ=255)

                                                             tcCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAc                                                                        <  2:79840/140‑1 (MQ=255)

                                                              ccccATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAAc                                                                           <  1:1171519/136‑1 (MQ=255)

                                                              ccccATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAAc                                                                           >  2:1171519/1‑136 (MQ=255)

                                                              ccccATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAcc                                                                       >  1:6558/1‑140 (MQ=255)

                                                              ccccATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAcc                                                                       >  2:510628/1‑140 (MQ=255)

                                                              ccccATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAcc                                                                       >  2:1234586/1‑140 (MQ=255)

                                                              ccccATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAcc                                                                       >  1:1111408/1‑140 (MQ=255)

                                                              ccccATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAcc                                                                       >  1:116237/1‑140 (MQ=255)

                                                               cccATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACca                                                                      <  1:1055701/140‑1 (MQ=255)

                                                                    aaTCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCg                                                                 >  2:45588/1‑140 (MQ=255)

                                                                     aTCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGt                                                                <  2:594907/140‑1 (MQ=255)

                                                                      tCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGTCCACAGCGTa                                                               <  2:338581/140‑1 (MQ=255)

                                                                           gtggtAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGtt                                                          <  1:756900/140‑1 (MQ=255)

                                                                              gtAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAg                                                       >  1:82907/1‑140 (MQ=255)

                                                                               tAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCTCTTTCCACACCGATTAACGACCACAGCGTAACGTTAAgg                                                      <  1:136145/140‑1 (MQ=255)

                                                                               tAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAgg                                                      <  2:295140/140‑1 (MQ=255)

                                                                               tAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAgg                                                      <  2:692039/140‑1 (MQ=255)

                                                                               tAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAgg                                                      <  1:288476/140‑1 (MQ=255)

                                                                               tAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAgg                                                      <  1:42699/140‑1 (MQ=255)

                                                                               tAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAgg                                                      <  1:368421/140‑1 (MQ=255)

                                                                                aGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAggg                                                     >  1:465290/1‑140 (MQ=255)

                                                                                    aGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACt                                                 <  1:639926/140‑1 (MQ=255)

                                                                                      tACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACttt                                               >  2:61431/1‑140 (MQ=255)

                                                                                      tACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACttt                                               >  1:1328210/1‑140 (MQ=255)

                                                                                      tACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACttt                                               >  2:1049774/1‑140 (MQ=255)

                                                                                        cATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGa                                             >  2:1340973/1‑140 (MQ=255)

                                                                                         aTAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCATAGCGTAACGTTAAGGGTACTTTGaa                                            <  1:42234/140‑1 (MQ=255)

                                                                                         aTAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGaa                                            <  1:61431/140‑1 (MQ=255)

                                                                                         aTAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGaa                                            >  1:494733/1‑140 (MQ=255)

                                                                                          tAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAAt                                           <  2:1328210/140‑1 (MQ=255)

                                                                                           aGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAAtt                                          >  2:1130202/1‑140 (MQ=255)

                                                                                           aGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAAtt                                          <  2:116237/140‑1 (MQ=255)

                                                                                             cAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGc                                        >  2:775621/1‑140 (MQ=255)

                                                                                               aaCGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCAc                                      <  2:1072323/140‑1 (MQ=255)

                                                                                                aCGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACGTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCAcc                                     >  2:1284787/1‑140 (MQ=255)

                                                                                                aCGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCAcc                                     >  1:189699/1‑140 (MQ=255)

                                                                                                aCGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCAcc                                     >  1:856933/1‑140 (MQ=255)

                                                                                                aCGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCAcc                                     >  1:1235133/1‑140 (MQ=255)

                                                                                                aCGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTC‑‑CACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGa                                   >  1:1228214/1‑140 (MQ=255)

                                                                                                   gcggcAATCAATACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGaa                                  <  1:22226/140‑1 (MQ=255)

                                                                                                       caatcaatACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTg                              >  2:526973/1‑140 (MQ=255)

                                                                                                         atcaatACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGcc                            <  2:856933/140‑1 (MQ=255)

                                                                                                         atcaatACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGcc                            <  1:1130202/140‑1 (MQ=255)

                                                                                                              tACCCCACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGc                       <  1:882785/140‑1 (MQ=255)

                                                                                                                ccccACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCg                     <  1:1049774/140‑1 (MQ=255)

                                                                                                                ccccACCAATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCg                     <  2:1176372/140‑1 (MQ=255)

                                                                                                                   caccaATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTg                  >  1:646929/1‑140 (MQ=255)

                                                                                                                   caccaATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTg                  <  1:900472/140‑1 (MQ=255)

                                                                                                                      caATGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACg               >  2:1414223/1‑140 (MQ=255)

                                                                                                                        aTGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGc                       >  2:1175644/1‑130 (MQ=255)

                                                                                                                        aTGGTGGCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGc                       <  1:1175644/130‑1 (MQ=255)

                                                                                                                           gtggCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTTCCCAGGCCGc                    >  2:1247696/1‑130 (MQ=255)

                                                                                                                           gtggCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTTCCCAGGCCGc                    <  1:1247696/130‑1 (MQ=255)

                                                                                                                             ggCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTC‑‑CACCGACGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgcc      <  2:1228214/140‑1 (MQ=255)

                                                                                                                              gCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAATGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgc       >  2:669208/1‑140 (MQ=255)

                                                                                                                              gCGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgc       >  1:353955/1‑140 (MQ=255)

                                                                                                                               cGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAATGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgcc      <  1:669208/140‑1 (MQ=255)

                                                                                                                               cGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgcc      <  2:1094302/140‑1 (MQ=255)

                                                                                                                               cGATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgcc      <  1:45588/140‑1 (MQ=255)

                                                                                                                                gATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgccg     <  2:362939/140‑1 (MQ=255)

                                                                                                                                gATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgccg     <  2:1162229/140‑1 (MQ=255)

                                                                                                                                gATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgccg     <  2:1214125/140‑1 (MQ=255)

                                                                                                                                gATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgccg     <  2:82907/140‑1 (MQ=255)

                                                                                                                                gATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgccg     <  1:775621/140‑1 (MQ=255)

                                                                                                                                gATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgccg     <  1:526973/140‑1 (MQ=255)

                                                                                                                                gATAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgccg     <  1:510628/140‑1 (MQ=255)

                                                                                                                                 aTAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgc       >  1:1050241/1‑137 (MQ=255)

                                                                                                                                 aTAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgc       <  2:790187/137‑1 (MQ=255)

                                                                                                                                 aTAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgc       >  1:790187/1‑137 (MQ=255)

                                                                                                                                 aTAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgc       <  2:1050241/137‑1 (MQ=255)

                                                                                                                                  tAGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgccacc   <  2:1319461/140‑1 (MQ=255)

                                                                                                                                   aGGGGCATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATGCCGCCa  >  2:439440/1‑140 (MQ=255)

GCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATGCCGCCA  >  NC_000913/4336226‑4336496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A