Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,339,493 A→G R343R (CGT→CGC)  adiA ← arginine decarboxylase, degradative

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,339,4930AG100.0% 327.9 / NA 88R343R (CGT→CGC) adiAarginine decarboxylase, degradative
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (36/52);  total (36/52)

TTCAGCAGTTTGTGGGTGGAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGACGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAGCGGGCTTTCACTGATT  >  NC_000913/4339356‑4339628
                                                                                                                                         |                                                                                                                                       
ttCAGCAGTTTGTGGGTGGAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCg                                                                                                                                       >  2:829874/1‑140 (MQ=255)
ttCAGCAGTTTGTGGGTGGAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCg                                                                                                                                       >  2:317637/1‑140 (MQ=255)
   agcagTTTGTGGGTGGAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATc                                                                                                                                    <  2:29510/140‑1 (MQ=255)
     cagTTTGTGGGTGGAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCgg                                                                                                                                  <  2:701205/140‑1 (MQ=255)
        tttGTGGGTGGAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAgg                                                                                                                               <  1:92773/140‑1 (MQ=255)
          tgtgGGTGGAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGtt                                                                                                                             >  2:242272/1‑140 (MQ=255)
            tgggtggAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGtttt                                                                                                                           <  1:735667/140‑1 (MQ=255)
             gggtggAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGttttt                                                                                                                          <  2:90044/140‑1 (MQ=255)
             gggtggAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGttttt                                                                                                                          <  1:1239548/140‑1 (MQ=255)
              ggtggAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGtttttt                                                                                                                         <  2:701692/140‑1 (MQ=255)
                  gAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTCTTTCcag                                                                                                                     >  2:797907/1‑140 (MQ=255)
                   aGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCcagc                                                                                                                    <  2:280332/140‑1 (MQ=255)
                    gtgggtggCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCcagca                                                                                                                   <  1:425686/140‑1 (MQ=255)
                      gggtggCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGa                                                                                                                 >  2:1266940/1‑140 (MQ=255)
                         tggCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATcc                                                                                                              <  1:1073072/140‑1 (MQ=255)
                            cGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTgc                                                                                                           >  2:5675/1‑140 (MQ=255)
                            cGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTgc                                                                                                           >  1:432155/1‑140 (MQ=255)
                                   ggTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTgcg                                                                                                          <  2:316732/134‑1 (MQ=255)
                                   ggTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTgcg                                                                                                          >  1:316732/1‑134 (MQ=255)
                                   ggTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTgcg                                                                                                          >  1:267470/1‑134 (MQ=255)
                                   ggTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTgcg                                                                                                          <  2:267470/134‑1 (MQ=255)
                                   ggTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGcttctt                                                                                                    <  1:455789/140‑1 (MQ=255)
                                   ggTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGcttctt                                                                                                    <  2:705596/140‑1 (MQ=255)
                                    gTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCttt                                                                                                   <  2:635890/140‑1 (MQ=255)
                                    gTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCttt                                                                                                   <  2:1032276/140‑1 (MQ=255)
                                      aGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAg                                                                                                 <  2:324395/140‑1 (MQ=255)
                                      aGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAg                                                                                                 <  1:740700/140‑1 (MQ=255)
                                        gACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCg                                                                                               <  2:127079/140‑1 (MQ=255)
                                        gACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCg                                                                                               <  2:975641/140‑1 (MQ=255)
                                        gACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCg                                                                                               <  1:1246545/140‑1 (MQ=255)
                                        gACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCg                                                                                               <  1:242272/140‑1 (MQ=255)
                                                tgATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAaca                                                                                       <  1:746459/140‑1 (MQ=255)
                                                 gATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAacac                                                                                      <  2:388574/140‑1 (MQ=255)
                                                  aTCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAg                                                                                                 <  2:216947/128‑1 (MQ=255)
                                                  aTCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAg                                                                                                 >  1:216947/1‑128 (MQ=255)
                                                  aTCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAacaca                                                                                     <  1:603951/140‑1 (MQ=255)
                                                  aTCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAacaca                                                                                     <  2:1208645/140‑1 (MQ=255)
                                                  aTCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAacaca                                                                                     <  1:282795/140‑1 (MQ=255)
                                                    cGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACg                                                                                   <  1:1075482/140‑1 (MQ=255)
                                                      ccAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGcc                                                                                 <  1:1230337/140‑1 (MQ=255)
                                                      ccAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGcc                                                                                 <  1:240048/140‑1 (MQ=255)
                                                      ccAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGcc                                                                                 <  2:712150/140‑1 (MQ=255)
                                                          gTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCa                                                                             >  2:1058644/1‑140 (MQ=255)
                                                          gTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCa                                                                             >  1:552237/1‑140 (MQ=255)
                                                           ttCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCAt                                                                            <  1:829874/140‑1 (MQ=255)
                                                           ttCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCAt                                                                            <  1:317637/140‑1 (MQ=255)
                                                            tCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATa                                                                           >  2:1067365/1‑140 (MQ=255)
                                                             cgccgcGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAg                                                                          >  1:86752/1‑140 (MQ=255)
                                                                cgcgCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTg                                                                       <  2:884946/140‑1 (MQ=255)
                                                                cgcgCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTg                                                                       >  2:1237195/1‑140 (MQ=255)
                                                                   gcATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAg                                                                    <  2:39688/140‑1 (MQ=255)
                                                                     aTGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGtt                                                                  <  2:432155/140‑1 (MQ=255)
                                                                        gCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGt                                                               <  1:5675/140‑1 (MQ=255)
                                                                           tAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCAATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTcac                                                            <  2:693346/140‑1 (MQ=255)
                                                                             gTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTcacca                                                          <  1:47072/140‑1 (MQ=255)
                                                                             gTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTcacca                                                          <  1:1266940/140‑1 (MQ=255)
                                                                               gATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATATCACACGCCGTCATAGGTGCAGTTGGTCACCACg                                                        >  2:1155160/1‑140 (MQ=255)
                                                                               gATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACg                                                        >  2:1097855/1‑140 (MQ=255)
                                                                                 tCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCa                                                      >  1:281808/1‑140 (MQ=255)
                                                                                   ggCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGt                                                    >  2:1106571/1‑140 (MQ=255)
                                                                                   ggCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGt                                                    >  2:759446/1‑140 (MQ=255)
                                                                                     cATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTaa                                                  >  2:43063/1‑140 (MQ=255)
                                                                                        aGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGAc                                               >  1:296640/1‑140 (MQ=255)
                                                                                             gggTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGttt                                          <  2:296640/140‑1 (MQ=255)
                                                                                               gTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTcacca                                                          >  1:362107/1‑122 (MQ=255)
                                                                                               gTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTcacca                                                          <  2:362107/122‑1 (MQ=255)
                                                                                                 tGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGc                                      <  1:965926/140‑1 (MQ=255)
                                                                                                       gTGCATAGCCGTACCAGGCTTCGTCAAATTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTAATAACACACGCCGGCATAGGTGCAGTTGGTCACCTCGCAGTAAGACGGTTTTTGccggtct                                <  2:804713/140‑6 (MQ=255)
                                                                                                       gTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGCCt                                <  2:942879/140‑1 (MQ=255)
                                                                                                        tGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCtt                               >  1:432608/1‑140 (MQ=255)
                                                                                                        tGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCtt                               <  1:756774/140‑1 (MQ=255)
                                                                                                        tGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCtt                               <  2:1117359/140‑1 (MQ=255)
                                                                                                         gCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGc                                      >  2:1184386/1‑132 (MQ=255)
                                                                                                         gCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGc                                      <  1:1184386/132‑1 (MQ=255)
                                                                                                         gCATAGCCGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCttt                              >  1:922882/1‑140 (MQ=255)
                                                                                                                cGTACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTg                       >  2:139632/1‑140 (MQ=255)
                                                                                                                  tACCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAACAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGt                     >  2:312816/1‑140 (MQ=255)
                                                                                                                   aCCAGGCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTc                    >  1:473390/1‑140 (MQ=255)
                                                                                                                       ggCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTc                    >  2:413772/1‑136 (MQ=255)
                                                                                                                       ggCTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTc                    <  1:413772/136‑1 (MQ=255)
                                                                                                                         cTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAg                  >  1:492681/1‑136 (MQ=255)
                                                                                                                         cTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAg                  <  2:523993/136‑1 (MQ=255)
                                                                                                                         cTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAg                  <  2:492681/136‑1 (MQ=255)
                                                                                                                         cTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAg                  >  1:523993/1‑136 (MQ=255)
                                                                                                                         cTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAGCggg              >  1:571316/1‑140 (MQ=255)
                                                                                                                         cTTCGTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAGCggg              >  2:264801/1‑140 (MQ=255)
                                                                                                                             gTCAAAGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAGCGGGCttt          >  1:961639/1‑140 (MQ=255)
                                                                                                                                aaaGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAGCGGGCTTTCAc       <  1:1067365/140‑1 (MQ=255)
                                                                                                                                  aGTGCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAGCGGGCTTTCACTg     >  2:919313/1‑140 (MQ=255)
                                                                                                                                     gCAGGCGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAGCGGGCTTTCACTGAtt  <  1:139632/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TTCAGCAGTTTGTGGGTGGAGTGGGTGGCGAAAACGGTAGGACCGTTGTGATCGCCAGGTTCGCCGCGCATGGCATAGTGATCGGCATAGATCGGGTTGAAACGTGCATAGCCGTACCAGGCTTCGTCAAAGTGCAGACGATCGGAGGTTTTTTCCAGCAGATCCTGCGCTTCTTTAGCGTTATAACACACGCCGTCATAGGTGCAGTTGGTCACCACGCAGTAAGACGGTTTTTGCCCGGCTTTGTCTTTGGTCAGCGGGCTTTCACTGATT  >  NC_000913/4339356‑4339628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A