Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,348,424 A→G G107G (GGT→GGC)  dcuB ← anaerobic C4‑dicarboxylate transporter DcuB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,348,4240AG100.0% 320.6 / NA 86G107G (GGT→GGC) dcuBanaerobic C4‑dicarboxylate transporter DcuB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (44/42);  total (44/42)

ACGACCGCAACCGACACCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGACCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGCCCGAAGCTTGCAAGGTCGCCG  >  NC_000913/4348287‑4348560
                                                                                                                                         |                                                                                                                                        
acGACCGCAACCGACACAGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGcc                                                                                                                                        >  2:1673568/1‑140 (MQ=255)
   aCCGCAACCGACACCGGACTGGCGATAATCCCCATCTGTGCACCGAT‑‑AACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTAc                                                                                                                                   >  1:989046/1‑140 (MQ=255)
    ccGCAACCGACACCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTa                                                                                                                                    <  2:1690226/140‑1 (MQ=255)
      gCAACCGACACCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTAcc                                                                                                                                  >  1:393694/1‑140 (MQ=255)
      gCAACCGACACC‑GACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCg                                                                                                                                 >  1:961836/1‑140 (MQ=255)
       cAACCGACACCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCg                                                                                                                                 >  1:629955/1‑140 (MQ=255)
        aaCCGACACCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGc                                                                                                                                <  1:472086/140‑1 (MQ=255)
        aaCCGACACCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGc                                                                                                                                <  2:1493383/140‑1 (MQ=255)
          ccGACACCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCaa                                                                                                                              >  2:163588/1‑140 (MQ=255)
             acacCGGACTGGCGATAATCCCCATCTGTGCACCGAT‑‑AACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAAt                                                                                                                         <  2:989046/140‑1 (MQ=255)
              cacCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCgaagaa                                                                                                                          >  2:285819/1‑140 (MQ=255)
                 cGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATgg                                                                                                                       <  1:97069/140‑1 (MQ=255)
                 cGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATgg                                                                                                                       >  1:786300/1‑140 (MQ=255)
                  ggACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGt                                                                                                                      <  1:137520/140‑1 (MQ=255)
                  ggACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGt                                                                                                                      <  2:786300/140‑1 (MQ=255)
                  ggACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGt                                                                                                                      <  2:1109449/140‑1 (MQ=255)
                  ggACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGt                                                                                                                      <  1:651228/140‑1 (MQ=255)
                  ggACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGt                                                                                                                      <  2:1220217/140‑1 (MQ=255)
                  ggACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGt                                                                                                                      <  2:1470225/140‑1 (MQ=255)
                  ggACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGt                                                                                                                      <  2:1321974/140‑1 (MQ=255)
                  ggACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTATTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGt                                                                                                                      <  1:1270954/140‑1 (MQ=255)
                    aCTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCa                                                                                                                    >  1:1272563/1‑140 (MQ=255)
                    aCTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCa                                                                                                                    >  2:209988/1‑140 (MQ=255)
                        gCGATAATCCCCTTCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCa                                                                                                                    <  2:1534239/136‑1 (MQ=255)
                        gCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCa                                                                                                                    >  1:1534239/1‑136 (MQ=255)
                             aaTCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAgg                                                                                                           >  1:1278846/1‑140 (MQ=255)
                              aTCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGt                                                                                                          >  1:832827/1‑140 (MQ=255)
                                    aTCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACaaa                                                                                                    <  2:393694/140‑1 (MQ=255)
                                    aTCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGACGTAGATGATCGGCAGAATGGTGTAAACCACATGTCCCGAACCGCAAAGAATGGTCCGTGTACAGGTCACaaa                                                                                                    >  2:325650/1‑140 (MQ=255)
                                      cTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGCTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACg                                                                                                  >  2:1596276/1‑140 (MQ=255)
                                         tgCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGgcg                                                                                               <  2:63287/140‑1 (MQ=255)
                                         tgCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGgcg                                                                                               >  1:1138858/1‑140 (MQ=255)
                                         tgCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGgcg                                                                                               <  1:209988/140‑1 (MQ=255)
                                           cACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGcgcg                                                                                             >  2:1040325/1‑140 (MQ=255)
                                              cGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACa                                                                                          >  1:1342334/1‑140 (MQ=255)
                                               gATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACaa                                                                                         <  2:502237/140‑1 (MQ=255)
                                               gATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACaa                                                                                         <  2:359779/140‑1 (MQ=255)
                                               gATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACaa                                                                                         <  1:1226710/140‑1 (MQ=255)
                                                aTAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGGATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAAt                                                                                        >  1:1288843/1‑140 (MQ=255)
                                                aTAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAAt                                                                                        >  2:438941/1‑140 (MQ=255)
                                                aTAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAAt                                                                                        >  2:3453/1‑140 (MQ=255)
                                                aTAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAAt                                                                                        >  2:1154429/1‑140 (MQ=255)
                                                 tAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAAtt                                                                                       <  1:139637/140‑1 (MQ=255)
                                                 tAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAAtt                                                                                       <  1:438941/140‑1 (MQ=255)
                                                 tAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAAtt                                                                                       <  2:984948/140‑1 (MQ=255)
                                                   gAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACaa                                                                                         >  2:1704490/1‑136 (MQ=255)
                                                   gAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACaa                                                                                         <  1:1704490/136‑1 (MQ=255)
                                                    aaCTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTgag                                                                                    >  2:381912/1‑140 (MQ=255)
                                                     aCTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTgaga                                                                                   <  2:629955/140‑1 (MQ=255)
                                                          ccgccATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACatat                                                                              >  1:1366551/1‑140 (MQ=255)
                                                          ccgccATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACatat                                                                              >  2:417975/1‑140 (MQ=255)
                                                              cATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCg                                                                          <  2:806141/140‑1 (MQ=255)
                                                                 cGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGt                                                                       <  1:1368025/140‑1 (MQ=255)
                                                                 cGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGt                                                                       <  2:1024139/140‑1 (MQ=255)
                                                                   gACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTg                                                                     <  2:1342334/140‑1 (MQ=255)
                                                                      gTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTgcgg                                                                  <  1:163588/140‑1 (MQ=255)
                                                                       ttCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGGATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTgcggc                                                                 <  2:1288843/140‑1 (MQ=255)
                                                                        tCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTgcggcg                                                                >  2:1463980/1‑140 (MQ=255)
                                                                         ccGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGgcgc                                                               <  2:575095/140‑1 (MQ=255)
                                                                                 aTGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCtt                                                       >  1:394217/1‑140 (MQ=255)
                                                                                 aTGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCtt                                                       >  2:915407/1‑140 (MQ=255)
                                                                                  tgttgtTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTtc                                                      >  2:1110831/1‑140 (MQ=255)
                                                                                  tgttgtTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTtc                                                      >  2:560759/1‑140 (MQ=255)
                                                                                         cTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCaa                                               >  2:1657848/1‑140 (MQ=255)
                                                                                         cTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCaa                                               >  1:481802/1‑140 (MQ=255)
                                                                                         cTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCaa                                               >  2:810512/1‑140 (MQ=255)
                                                                                           tAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAAtt                                             >  2:238844/1‑140 (MQ=255)
                                                                                           tAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAAtt                                             >  1:1371685/1‑140 (MQ=255)
                                                                                           tAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAAtt                                             >  2:847740/1‑140 (MQ=255)
                                                                                           tAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAAtt                                             >  1:1114235/1‑140 (MQ=255)
                                                                                                 cGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTgcagc                                       <  1:325650/140‑1 (MQ=255)
                                                                                                 cGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTgcagc                                       <  2:832827/140‑1 (MQ=255)
                                                                                                   aCGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCAt                                     <  2:198628/140‑1 (MQ=255)
                                                                                                   aCGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCAt                                     <  2:481802/140‑1 (MQ=255)
                                                                                                   aCGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCAt                                     <  2:1371685/140‑1 (MQ=255)
                                                                                                   aCGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCAt                                     <  2:1272563/140‑1 (MQ=255)
                                                                                                            atgatCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAg                            <  2:1565996/140‑1 (MQ=255)
                                                                                                             tgatCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGa                           <  2:14824/140‑1 (MQ=255)
                                                                                                              gatCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGAc                          <  2:1278846/140‑1 (MQ=255)
                                                                                                                tCGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAATGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCg                        >  1:736317/1‑140 (MQ=255)
                                                                                                                 cGGCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGc                       >  2:338648/1‑140 (MQ=255)
                                                                                                                  ggCAGAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGcc                      >  1:477100/1‑140 (MQ=255)
                                                                                                                      gAATGGTGTAAACCACATGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAATGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGCCCGaa                  <  2:736317/140‑1 (MQ=255)
                                                                                                                            tgtAAGCCACATGCCCCGTACCGCAAAGAATTGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGCCCGAAGCTTGc            >  2:1537506/1‑140 (MQ=255)
                                                                                                                                     caTGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGCCCGAAGCTTGCAAGGTCGcc   >  2:499833/1‑140 (MQ=255)
                                                                                                                                     caTGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGCCCGAAGCTTGCAAGGTCGcc   >  1:952217/1‑140 (MQ=255)
                                                                                                                                     caTGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATAATTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGCCCGAAGCTTGCAAGGTCGcc   >  2:1592427/1‑140 (MQ=255)
                                                                                                                                      aTGGCCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGCCCGAAGCTTGCAAGGTCGCCg  >  1:702180/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                        
ACGACCGCAACCGACACCGGACTGGCGATAATCCCCATCTGTGCACCGATAGAACTTGCCGCCATCGGACGTTCCGGACGGATGTTGTTCTTAATGGCGACGTCGTAGATGATCGGCAGAATGGTGTAAACCACATGACCCGTACCGCAAAGAATGGTCAGTGTACAGGTCACAAACGGCGCGACAATTGAGACATATTTCGGGTTGCGGCGCAGCAGCTTCTCGGCAATTTGCAGCATGACATCAAGACCGCCCGAAGCTTGCAAGGTCGCCG  >  NC_000913/4348287‑4348560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A