Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,355,144 A→G L423P (CTG→CCG)  dtpC ← dipeptide/tripeptide:H(+) symporter DtpC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,355,1440AG100.0% 240.0 / NA 67L423P (CTG→CCG) dtpCdipeptide/tripeptide:H(+) symporter DtpC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (29/38);  total (29/38)

GCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCAGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGCCCGGAT  >  NC_000913/4355015‑4355278
                                                                                                                                 |                                                                                                                                      
gCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGc                                                                                                                              >  1:715887/1‑140 (MQ=255)
 ccAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCg                                                                                                                             >  2:538434/1‑140 (MQ=255)
  cAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGa                                                                                                                            >  1:626151/1‑140 (MQ=255)
     tACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACcg                                                                                                                         >  1:326965/1‑140 (MQ=255)
     tACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACcg                                                                                                                         >  2:896251/1‑140 (MQ=255)
        gacgaTGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCgcgc                                                                                                                      <  2:759900/140‑1 (MQ=255)
        gacgaTGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCgcgc                                                                                                                      <  2:85707/140‑1 (MQ=255)
          cgaTGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCt                                                                                                                    >  2:901925/1‑140 (MQ=255)
            atgatCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGt                                                                                                                  >  2:720794/1‑140 (MQ=255)
             tgatCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGtt                                                                                                                 <  1:375880/140‑1 (MQ=255)
               atCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGc                                                                                                               <  1:538434/140‑1 (MQ=255)
               atCGCAACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGc                                                                                                               <  1:909250/140‑1 (MQ=255)
                tCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCTAGTTGGCGACCGCGCCTGTTGcc                                                                                                              <  2:1003606/140‑1 (MQ=255)
                  gcgACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAg                                                                                                            <  1:896251/140‑1 (MQ=255)
                   cgACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGc                                                                                                               <  1:906414/136‑1 (MQ=255)
                   cgACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGc                                                                                                               >  2:906414/1‑136 (MQ=255)
                         aaGCCAACGTCCACTCTCCCATCTGAGAAAAGAGTCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATaa                                                                                                     >  2:1068892/1‑140 (MQ=255)
                         aaGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATaa                                                                                                     >  1:112028/1‑140 (MQ=255)
                           gCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAAt                                                                                                   >  2:26937/1‑140 (MQ=255)
                           gCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAAt                                                                                                   >  2:468670/1‑140 (MQ=255)
                            ccAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATc                                                                                                  <  1:420615/140‑1 (MQ=255)
                              aaCGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAGTTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCata                                                                                                        <  2:381048/132‑1 (MQ=255)
                              aaCGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAGTTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCata                                                                                                        >  1:381048/1‑132 (MQ=255)
                              aaCGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATccc                                                                                                <  1:312597/140‑1 (MQ=255)
                               aCGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCg                                                                                               <  1:720794/140‑1 (MQ=255)
                                cGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCgg                                                                                              >  2:139460/1‑140 (MQ=255)
                                cGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCgg                                                                                              >  1:625278/1‑140 (MQ=255)
                                cGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCgg                                                                                              >  2:947072/1‑140 (MQ=255)
                                    cACTCTCCCATCTGAGAAAAGAGTCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTaa                                                                                          <  1:1068892/140‑1 (MQ=255)
                                         tcCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGc                                                                                     >  1:914615/1‑140 (MQ=255)
                                            cATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAg                                                                                  <  2:860377/140‑1 (MQ=255)
                                             aTCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGa                                                                                 >  1:454328/1‑140 (MQ=255)
                                              tCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGAc                                                                                >  2:712923/1‑140 (MQ=255)
                                              tCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGAc                                                                                <  2:715887/140‑1 (MQ=255)
                                              tCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGAc                                                                                <  1:487483/140‑1 (MQ=255)
                                                    aaaaGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTc                                                                          >  2:336235/1‑140 (MQ=255)
                                                     aaaGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCa                                                                         <  2:626151/140‑1 (MQ=255)
                                                       aGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGa                                                                       <  1:139460/140‑1 (MQ=255)
                                                        gAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGACTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGAc                                                                      >  2:1028369/1‑140 (MQ=255)
                                                                       tGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCaa                                                       <  2:183162/140‑1 (MQ=255)
                                                                                cATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCg                                              <  2:841583/140‑1 (MQ=255)
                                                                                  tACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCggg                                            <  1:130544/140‑1 (MQ=255)
                                                                                   aCCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGt                                           <  2:54086/140‑1 (MQ=255)
                                                                                        tAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATa                                      <  1:468670/140‑1 (MQ=255)
                                                                                        tAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATa                                      <  1:688353/140‑1 (MQ=255)
                                                                                          aTTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATaaa                                    <  2:1011542/140‑1 (MQ=255)
                                                                                          aTTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATaaa                                    <  1:336235/140‑1 (MQ=255)
                                                                                                 aCTCTGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCg                             >  1:254644/1‑140 (MQ=255)
                                                                                                    ctGTCGTCTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCa                          <  2:839629/140‑1 (MQ=255)
                                                                                                      gtcgtcTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCaaa                        <  2:326965/140‑1 (MQ=255)
                                                                                                      gtcgtcTGCTGTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCaaa                        <  2:112028/140‑1 (MQ=255)
                                                                                                            tgctgTGCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCAt                  >  1:301339/1‑140 (MQ=255)
                                                                                                                 tgCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAgcg             >  1:444083/1‑140 (MQ=255)
                                                                                                                 tgCCACGACGCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAgcg             >  1:528017/1‑140 (MQ=255)
                                                                                                                      cgacgCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGc        <  1:840863/140‑1 (MQ=255)
                                                                                                                      cgacgCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGc        <  1:565357/140‑1 (MQ=255)
                                                                                                                      cgacgCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGc        <  1:26937/140‑1 (MQ=255)
                                                                                                                       gacgCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGcc       <  2:104160/140‑1 (MQ=255)
                                                                                                                        acgCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGccc      >  2:958628/1‑140 (MQ=255)
                                                                                                                        acgCCTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGccc      >  2:624205/1‑140 (MQ=255)
                                                                                                                           ccTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAgcg             >  2:605859/1‑130 (MQ=255)
                                                                                                                           ccTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAgcg             <  1:605859/130‑1 (MQ=255)
                                                                                                                           ccTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGCCCGGa   <  2:444083/140‑1 (MQ=255)
                                                                                                                           ccTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGCCCGGa   <  1:901925/140‑1 (MQ=255)
                                                                                                                            cTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGc        >  1:942486/1‑134 (MQ=255)
                                                                                                                            cTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGc        <  2:942486/134‑1 (MQ=255)
                                                                                                                            cTGCCGGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGCCCGGat  <  1:118978/140‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                      
GCCAATACGACGATGATCGCGACACAAGCCAACGTCCACTCTCCCATCTGAGAAAAGAATCGCTGGTAAGCTGCAATTGCCATACCGCTAATTTGCGACTCTGTCGTCTGCTGTGCCACGACGCCTGCCAGCCAGTTGGCGACCGCGCCTGTTGCCAGCATATAAATCCCGGTTAATACGCCAGACATTTTCAGACGCGTGATTTGCGCAATCGCCACCGGGTCAATAAAGAGTTCGGCAAAGCCCATTAGCGCCAGCCCGGAT  >  NC_000913/4355015‑4355278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A