Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,357,799	A→G	G273G (GGT→GGC)	cadA ←	lysine decarboxylase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,357,799	0	A	G	100.0%	782.5 / NA	213	G273G (GGT→GGC)	cadA	lysine decarboxylase 1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (117/96); total (117/96)

Only 100 of 217 total aligned reads displayed.

TGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGCAGAGTACATAC  >  NC_000913/4357663‑4357935

  atgaAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAg                                                                                                                                     >  2:928449/1‑140 (MQ=255)

     aaGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAAt                                                                                                                                  <  2:1582345/140‑1 (MQ=255)

       gTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATAc                                                                                                                                >  1:285029/1‑140 (MQ=255)

       gTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATAc                                                                                                                                >  1:1621144/1‑140 (MQ=255)

         cGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCg                                                                                                                              >  2:2044789/1‑140 (MQ=255)

         cGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCg                                                                                                                              <  1:4926/140‑1 (MQ=255)

            tgttgtACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTaa                                                                                                                           <  1:1502493/140‑1 (MQ=255)

                      cagACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACggg                                                                                                                 >  1:1840877/1‑140 (MQ=255)

                      cagACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACggg                                                                                                                 >  2:387940/1‑140 (MQ=255)

                      cagACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACggg                                                                                                                 >  1:1607785/1‑140 (MQ=255)

                        gACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTa                                                                                                                            <  1:671090/127‑1 (MQ=255)

                        gACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTc                                                                                                               >  2:1479669/1‑140 (MQ=255)

                        gACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTc                                                                                                               >  2:2358372/1‑140 (MQ=255)

                        gACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTc                                                                                                               >  1:579756/1‑140 (MQ=255)

                        gACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTc                                                                                                               >  1:1165298/1‑140 (MQ=255)

                         aCCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCg                                                                                                              >  1:1767532/1‑140 (MQ=255)

                         aCCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCg                                                                                                              >  1:615090/1‑140 (MQ=255)

                         aCCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCg                                                                                                              >  2:2374904/1‑140 (MQ=255)

                         aCCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCATAAGCGTTACGGGTCg                                                                                                              >  1:438404/1‑140 (MQ=255)

                           catcatAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTAc                                                                                                                    >  2:1299033/1‑132 (MQ=255)

                           catcatAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCggg                                                                                                            <  2:1969163/140‑1 (MQ=255)

                           catcatAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCggg                                                                                                            <  2:132871/140‑1 (MQ=255)

                           catcatAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCggg                                                                                                            <  1:2374904/140‑1 (MQ=255)

                           catcatAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCggg                                                                                                            <  1:2358372/140‑1 (MQ=255)

                           catcatAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCggg                                                                                                            <  2:1767532/140‑1 (MQ=255)

                           catcatAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCggg                                                                                                            <  2:1840877/140‑1 (MQ=255)

                                   gTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATa                                                                                                    >  1:94522/1‑140 (MQ=255)

                                     agagTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGa                                                                                                  >  1:195908/1‑140 (MQ=255)

                                     agagTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGa                                                                                                  >  2:1173830/1‑140 (MQ=255)

                                      gagTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAt                                                                                                 <  1:387940/140‑1 (MQ=255)

                                       agTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAtt                                                                                                >  1:1125141/1‑140 (MQ=255)

                                       agTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAtt                                                                                                >  2:281866/1‑140 (MQ=255)

                                       agTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAtt                                                                                                >  2:332246/1‑140 (MQ=255)

                                       agTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAtt                                                                                                >  2:859649/1‑140 (MQ=255)

                                       agTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAt                                                                                                 <  1:1780754/139‑1 (MQ=255)

                                        gTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTg                                                                                               >  2:2205408/1‑140 (MQ=255)

                                        gTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTg                                                                                               >  1:1522919/1‑140 (MQ=255)

                                        gTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTg                                                                                               >  2:91882/1‑140 (MQ=255)

                                         ttGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTgg                                                                                              >  1:180923/1‑140 (MQ=255)

                                             tAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAt                                                                                                 <  2:1797463/133‑1 (MQ=255)

                                             tAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTa                                                                                          >  1:1388324/1‑140 (MQ=255)

                                                 tACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACAt                                                                                      >  2:1522786/1‑140 (MQ=255)

                                                 tACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACAt                                                                                      >  1:347953/1‑140 (MQ=255)

                                                   cAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCg                                                                                    >  2:1211539/1‑140 (MQ=255)

                                                   cAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCg                                                                                    <  1:907018/140‑1 (MQ=255)

                                                    aGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGc                                                                                   <  1:528955/140‑1 (MQ=255)

                                                    aGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGc                                                                                   <  1:1210400/140‑1 (MQ=255)

                                                      cATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtc                                                                                 >  1:1086622/1‑140 (MQ=255)

                                                      cATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtc                                                                                 >  1:2291024/1‑140 (MQ=255)

                                                      cATGTACCCGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCt                                                                                  >  2:1535359/1‑139 (MQ=255)

                                                       aTGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtca                                                                                >  1:2314112/1‑140 (MQ=255)

                                                          tACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtcatca                                                                             >  1:2037878/1‑140 (MQ=255)

                                                          tACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtcatca                                                                             >  2:1232906/1‑140 (MQ=255)

                                                           aCCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAGTAGATTGGCGTAACATCGc                                                                                   >  2:375477/1‑133 (MQ=255)

                                                           aCCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAGTAGATTGGCGTAACATCGc                                                                                   <  1:375477/133‑1 (MQ=255)

                                                           aCCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtcatcat                                                                            >  2:867141/1‑140 (MQ=255)

                                                           aCCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtcatcat                                                                            >  1:131726/1‑140 (MQ=255)

                                                           aCCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtcatcat                                                                            >  2:425485/1‑140 (MQ=255)

                                                           aCCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCt                                                                                  >  1:1009799/1‑134 (MQ=255)

                                                           aCCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCt                                                                                  <  2:1009799/134‑1 (MQ=255)

                                                                ccAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtcatcatcatca                                                                       >  1:403994/1‑140 (MQ=255)

                                                                ccAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtcatcatcatca                                                                       >  1:318205/1‑140 (MQ=255)

                                                                  aGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAgg                                                                     <  2:579756/140‑1 (MQ=255)

                                                                  aGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAgg                                                                     <  2:726072/140‑1 (MQ=255)

                                                                   ggTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGt                                                                    >  1:1976736/1‑140 (MQ=255)

                                                                   ggTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGt                                                                    >  1:849491/1‑140 (MQ=255)

                                                                    gTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTg                                                                   >  2:640061/1‑140 (MQ=255)

                                                                    gTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTg                                                                   >  2:1260173/1‑140 (MQ=255)

                                                                          tttGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAg                                                             <  2:79973/140‑1 (MQ=255)

                                                                                gtTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGAttt                                                       <  2:882180/140‑1 (MQ=255)

                                                                                    ctttcACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGTTTTGTgg                                                   <  2:1388324/140‑1 (MQ=255)

                                                                                    ctttcACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTgg                                                   <  2:1809576/140‑1 (MQ=255)

                                                                                        cACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGt                                               <  2:182326/140‑1 (MQ=255)

                                                                                        cACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGt                                               <  2:2291024/140‑1 (MQ=255)

                                                                                            cgcTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACg                                           <  2:656129/140‑1 (MQ=255)

                                                                                             gcTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACgg                                          <  1:882258/140‑1 (MQ=255)

                                                                                               ttAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTc                                        <  2:2314112/140‑1 (MQ=255)

                                                                                                 aGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCaa                                      >  1:98396/1‑140 (MQ=255)

                                                                                                  gCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAAt                                     <  1:792688/140‑1 (MQ=255)

                                                                                                  gCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAAt                                     <  1:2266720/140‑1 (MQ=255)

                                                                                                       ggTAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCAATTTGTGGCAGTTACGGTCAATCAGaa                                <  2:318205/140‑1 (MQ=255)

                                                                                                         tAGCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATg                              >  2:1079693/1‑140 (MQ=255)

                                                                                                           gCGTGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGt                            >  2:1883849/1‑140 (MQ=255)

                                                                                                           gCGTGCTGGAATTCACTCTGCGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGACAATCAGAATGGt                            >  1:625023/1‑140 (MQ=255)

                                                                                                              tGCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGtgct                         <  1:1238543/140‑1 (MQ=255)

                                                                                                               gCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGtgctg                        <  1:1867206/140‑1 (MQ=255)

                                                                                                               gCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGtgctg                        <  2:1087299/140‑1 (MQ=255)

                                                                                                               gCTGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGtgctg                        <  2:1621144/140‑1 (MQ=255)

                                                                                                                 tGGAATTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGctgcc                      >  2:254520/1‑140 (MQ=255)

                                                                                                                    aaTTCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGctgcctgc                   >  2:2137598/1‑140 (MQ=255)

                                                                                                                      ttCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGctgcctg                    <  2:2225959/137‑1 (MQ=255)

                                                                                                                      ttCACTCTGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGctgcctg                    >  1:2225959/1‑137 (MQ=255)

                                                                                                                          ctctGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGc             <  1:1479669/140‑1 (MQ=255)

                                                                                                                           tctGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGCa            <  2:1590647/140‑1 (MQ=255)

                                                                                                                           tctGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGCa            <  1:1268905/140‑1 (MQ=255)

                                                                                                                           tctGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGCa            >  1:875066/1‑140 (MQ=255)

                                                                                                                            ctGTGGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGCag           <  1:1584769/140‑1 (MQ=255)

                                                                                                                              gtgGGATACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGCagag         <  2:2037878/140‑1 (MQ=255)

                                                                                                                                    tACCGCCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCctgctg                 >  1:1920886/1‑126 (MQ=255)

                                                                                                                                     accgccAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGCagag         >  2:1936481/1‑133 (MQ=255)

TGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAATTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTACGGTCAATCAGAATGGTGCTGCCTGCTGGAGCAGAGTACATAC  >  NC_000913/4357663‑4357935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A