Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,502,600 T→C T278A (ACC→GCC)  insG ← KpLE2 phage‑like element; IS4 putative transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,502,6000TC100.0% 424.1 / NA 115T278A (ACC→GCC) insGKpLE2 phage‑like element; IS4 putative transposase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (52/63);  total (52/63)

Only 100 of 115 total aligned reads displayed.

CGTCTGTTTTATCTCCCTGTATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGTCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTGAGAGG  >  NC_000913/4502463‑4502735
                                                                                                                                         |                                                                                                                                       
 gTCTGTTTTATCTCCCTGTATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCcag                                                                                                                                      <  1:422625/140‑1 (MQ=255)
          aTCTCCCTGTATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGc                                                                                                                             <  2:1085456/140‑1 (MQ=255)
              cccTGTATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTc                                                                                                                         <  2:463268/140‑1 (MQ=255)
               ccTGTATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCa                                                                                                                        <  2:448969/140‑1 (MQ=255)
                cTGTATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTAAc                                                                                                                       >  2:615284/1‑140 (MQ=255)
                 tGTATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACt                                                                                                                      <  2:1364585/140‑1 (MQ=255)
                   tATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTc                                                                                                                    >  1:994635/1‑140 (MQ=255)
                   tATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTc                                                                                                                    >  1:1092133/1‑140 (MQ=255)
                    aTCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCa                                                                                                                   <  2:1354964/140‑1 (MQ=255)
                    aTCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCa                                                                                                                   <  1:1209798/140‑1 (MQ=255)
                    aTCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCa                                                                                                                   <  1:1252308/140‑1 (MQ=255)
                     tCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCAt                                                                                                                  >  1:291342/1‑140 (MQ=255)
                     tCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCAt                                                                                                                  >  2:98415/1‑140 (MQ=255)
                      cccAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCAtt                                                                                                                 >  2:1146304/1‑140 (MQ=255)
                         aGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTcc                                                                                                              >  1:427730/1‑140 (MQ=255)
                         aGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTcc                                                                                                              >  1:1200016/1‑140 (MQ=255)
                          gTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTccc                                                                                                             >  1:874741/1‑140 (MQ=255)
                          gTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTccc                                                                                                             >  1:294710/1‑140 (MQ=255)
                           ttCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCa                                                                                                            >  2:383479/1‑140 (MQ=255)
                               aTTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTcc                                                                                                        >  2:985786/1‑140 (MQ=255)
                               aTTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTcc                                                                                                        >  1:1060667/1‑140 (MQ=255)
                                tttCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTccc                                                                                                       >  2:1177501/1‑140 (MQ=255)
                                   cccAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGc                                                                                                    <  1:370230/140‑1 (MQ=255)
                                   cccAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGc                                                                                                    <  1:985786/140‑1 (MQ=255)
                                   cccAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGc                                                                                                    <  1:1177501/140‑1 (MQ=255)
                                       gCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACt                                                                                                <  2:1387384/140‑1 (MQ=255)
                                                      aTCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCg                                                                                 >  2:1339453/1‑140 (MQ=255)
                                                      aTCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCg                                                                                 >  2:968611/1‑140 (MQ=255)
                                                       tCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCgg                                                                                >  1:1005176/1‑140 (MQ=255)
                                                         ccccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGTGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGc                                                                              >  2:1390647/1‑140 (MQ=255)
                                                         ccccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGc                                                                              <  2:1171702/140‑1 (MQ=255)
                                                         ccccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGc                                                                              >  2:150567/1‑140 (MQ=255)
                                                         ccccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGc                                                                              >  1:1258598/1‑140 (MQ=255)
                                                         ccccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGc                                                                              >  1:361648/1‑140 (MQ=255)
                                                         ccccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGc                                                                              <  2:1254739/140‑1 (MQ=255)
                                                         ccccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGc                                                                              >  1:435323/1‑140 (MQ=255)
                                                           ccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTg                                                                            >  2:266911/1‑140 (MQ=255)
                                                           ccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTg                                                                            >  2:465230/1‑140 (MQ=255)
                                                           ccATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTg                                                                            >  2:794930/1‑140 (MQ=255)
                                                              tttCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGtt                                                                         >  2:1038740/1‑140 (MQ=255)
                                                                    ctccGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGc                                                                   <  1:1038740/140‑1 (MQ=255)
                                                                     tccGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCt                                                                  <  2:576281/140‑1 (MQ=255)
                                                                      ccGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCtt                                                                 <  2:1280739/140‑1 (MQ=255)
                                                                      ccGCGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCtt                                                                 <  2:282841/140‑1 (MQ=255)
                                                                       cGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTc                                                                >  1:1272987/1‑140 (MQ=255)
                                                                         gggAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCAc                                                              >  1:962220/1‑140 (MQ=255)
                                                                         gggAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCAc                                                              >  2:784858/1‑140 (MQ=255)
                                                                         gggAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCAc                                                              >  1:990751/1‑140 (MQ=255)
                                                                         gggAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTAACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCat                                                              <  1:615284/140‑2 (MQ=255)
                                                                         gggAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGAC‑TTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCAcc                                                             <  2:436175/140‑1 (MQ=255)
                                                                            aaGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCtt                                                                 <  2:1101562/134‑1 (MQ=255)
                                                                            aaGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAg                                                           >  1:468379/1‑140 (MQ=255)
                                                                              gcgcATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCAcc                                                             <  2:1081437/136‑1 (MQ=255)
                                                                              gcgcATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCAcc                                                             >  1:1081437/1‑136 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCa                                                                     >  2:569604/1‑125 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCa                                                                     <  1:569604/125‑1 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCAcc                                                             <  1:1020222/133‑1 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCAcc                                                             >  2:1020222/1‑133 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAgatgat                                                      <  1:98415/140‑1 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAgatgat                                                      <  2:508370/140‑1 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAgatgat                                                      <  1:266911/140‑1 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAgatgat                                                      <  2:427730/140‑1 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAgatgat                                                      >  2:1019054/1‑140 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAgatgat                                                      <  2:962220/140‑1 (MQ=255)
                                                                                 cATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAgatgat                                                      <  1:91041/140‑1 (MQ=255)
                                                                                         ccgtcATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGTGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTCCAGCTTCACCAGATGATCGCCTTTa                                              >  1:15575/1‑140 (MQ=255)
                                                                                           gtcATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTAcc                                            <  2:1092133/140‑1 (MQ=255)
                                                                                             cATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCa                                          <  1:968611/140‑1 (MQ=255)
                                                                                             cATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCa                                          <  2:361648/140‑1 (MQ=255)
                                                                                              aTCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAga                                                          <  1:666763/123‑1 (MQ=255)
                                                                                              aTCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAga                                                          >  2:666763/1‑123 (MQ=255)
                                                                                                      cagcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGa                                 <  2:55913/140‑1 (MQ=255)
                                                                                                      cagcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGa                                 <  2:810793/140‑1 (MQ=255)
                                                                                                      cagcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGa                                 <  2:1272987/140‑1 (MQ=255)
                                                                                                      cagcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGa                                 <  2:969587/140‑1 (MQ=255)
                                                                                                       agcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCt                                   >  2:389316/1‑137 (MQ=255)
                                                                                                       agcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCt                                   <  1:389316/137‑1 (MQ=255)
                                                                                                       agcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGAt                                <  2:747969/140‑1 (MQ=255)
                                                                                                       agcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGAt                                <  2:1241566/140‑1 (MQ=255)
                                                                                                        gcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGAtc                               <  2:291342/140‑1 (MQ=255)
                                                                                                        gcagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGAtc                               <  2:672762/140‑1 (MQ=255)
                                                                                                         cagATGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGAtct                              >  1:224747/1‑140 (MQ=255)
                                                                                                            aTGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTg                                  >  1:652469/1‑133 (MQ=255)
                                                                                                            aTGGCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTg                                  <  2:652469/133‑1 (MQ=255)
                                                                                                              ggCAGACTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGT‑CCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCat                        >  2:1344381/1‑140 (MQ=255)
                                                                                                                   aCTTTTCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTg                    <  1:1146304/140‑1 (MQ=255)
                                                                                                                     ttttCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTgcg                  <  2:1308217/140‑1 (MQ=255)
                                                                                                                     ttttCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTgcg                  <  2:522688/140‑1 (MQ=255)
                                                                                                                     ttttCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTgcg                  >  2:358359/1‑140 (MQ=255)
                                                                                                                     ttttCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTgcg                  <  1:784858/140‑1 (MQ=255)
                                                                                                                       ttCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCt                <  2:426870/140‑1 (MQ=255)
                                                                                                                       ttCCTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCt                <  2:213003/140‑1 (MQ=255)
                                                                                                                         ccTTTGCGCGTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTcc              <  1:358359/140‑1 (MQ=255)
                                                                                                                               cgcgTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCt        >  1:538130/1‑140 (MQ=255)
                                                                                                                                 cgTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGT‑CCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTgag     <  1:1344381/140‑1 (MQ=255)
                                                                                                                                  gTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTgag     <  2:538130/140‑1 (MQ=255)
                                                                                                                                  gTCACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTgag     <  1:1024528/140‑1 (MQ=255)
                                                                                                                                    cACGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTGagag   >  2:733475/1‑140 (MQ=255)
                                                                                                                                     aCGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTGAGAgg  <  1:465230/140‑1 (MQ=255)
                                                                                                                                     aCGGCCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTGAGAgg  <  1:794930/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGTCTGTTTTATCTCCCTGTATCCCAGTTCGATTTCCCAGCGATGACTGTACAGATCCCCCATTTCTCCTCCGGGGAAGCGCATGGCGTCCGTCATCGACGTCAGCAGATGGCAGACTTTTCCTTTGCGCGTCACGGTCAGCAGGCGGGCAGTCACTTCATTTCCCAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTGAGAGG  >  NC_000913/4502463‑4502735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A