Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,503,169 (G)5→6 coding (263/1329 nt) insG ← KpLE2 phage‑like element; IS4 putative transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,503,1641.G100.0% 251.6 / NA 71S90R (AGT→CGT) insGKpLE2 phage‑like element; IS4 putative transposase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (38/33);  total (38/33)

TCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACT‑GGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAGGGGAAGACGGCGCTTG  >  NC_000913/4503034‑4503297
                                                                                                                                   |                                                                                                                                     
tCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGTGGGCCTGAATAACGGCACT‑ggggggcaa                                                                                                                              >  2:919143/1‑136 (MQ=255)
      gCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAgg                                                                                                                         >  2:536636/1‑140 (MQ=255)
      gCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAgg                                                                                                                         >  2:392881/1‑140 (MQ=255)
      gCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAgg                                                                                                                         >  2:1124465/1‑140 (MQ=255)
      gCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAgg                                                                                                                         >  2:160258/1‑140 (MQ=255)
           cagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGa                                                                                                                    >  2:451344/1‑140 (MQ=255)
           cagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGa                                                                                                                    >  1:278223/1‑140 (MQ=255)
           cagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGa                                                                                                                    >  2:1073509/1‑140 (MQ=255)
           cagGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGa                                                                                                                    >  2:656225/1‑140 (MQ=255)
                tCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGcc                                                                                                               <  1:656225/140‑1 (MQ=255)
                tCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGcc                                                                                                               <  1:451344/140‑1 (MQ=255)
                 cAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGGGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGccc                                                                                                              >  2:951894/1‑140 (MQ=255)
                    gCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGgc                                                                                                           <  1:160258/140‑1 (MQ=255)
                    gCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGgc                                                                                                           <  1:1124465/140‑1 (MQ=255)
                         aCCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCat                                                                                                      >  1:174383/1‑140 (MQ=255)
                         aCCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCat                                                                                                      <  2:600279/140‑1 (MQ=255)
                         aCCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCat                                                                                                      >  1:122534/1‑140 (MQ=255)
                          ccAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCatg                                                                                                     <  1:1129802/140‑1 (MQ=255)
                             gTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGgc                                                                                                           <  1:430430/131‑1 (MQ=255)
                             gTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGgc                                                                                                           >  2:430430/1‑131 (MQ=255)
                              tGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGTACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATGACGGCACTGGGGGGGAACGAAGGGGCGATTGCCCCggagccgggtgt                                                                                                 >  2:24966/1‑133 (MQ=255)
                              tGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGt                                                                                                 >  2:906242/1‑140 (MQ=255)
                              tGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGt                                                                                                 >  2:414145/1‑140 (MQ=255)
                                cGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTcc                                                                                               <  1:759997/140‑1 (MQ=255)
                                   aTGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAgg                                                                                            <  2:278223/140‑1 (MQ=255)
                                    tGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGc                                                                                           <  2:171704/140‑1 (MQ=255)
                                    tGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGc                                                                                           <  1:414145/140‑1 (MQ=255)
                                          gtggcgtTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTca                                                                                     <  2:221467/140‑1 (MQ=255)
                                              cgtTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAAt                                                                                 <  2:830226/140‑1 (MQ=255)
                                                       agagCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAag                                                                        <  1:596314/140‑1 (MQ=255)
                                                       agagCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAag                                                                        >  1:1103818/1‑140 (MQ=255)
                                                        gagCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAaga                                                                       >  1:718120/1‑140 (MQ=255)
                                                         agCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAagag                                                                      <  1:522424/140‑1 (MQ=255)
                                                              cgcTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCt                                                                 >  2:1108894/1‑140 (MQ=255)
                                                                cTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCttt                                                               >  1:236106/1‑140 (MQ=255)
                                                                   ttttCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACg                                                            >  1:67881/1‑140 (MQ=255)
                                                                            acacGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAgcgc                                                   <  1:392881/140‑1 (MQ=255)
                                                                             cacGCGGCGGACAGCCTCTCTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGcc                                                  >  1:883417/1‑140 (MQ=255)
                                                                             cacGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGcc                                                  >  1:726415/1‑140 (MQ=255)
                                                                             cacGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGcc                                                  >  1:426655/1‑140 (MQ=255)
                                                                             cacGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGcc                                                  >  1:237427/1‑140 (MQ=255)
                                                                               cgcgGCGGACAGCCTCACTTCCCAGGCGCTGGTGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCAt                                                <  1:919143/140‑1 (MQ=255)
                                                                               cgcgGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCAt                                                <  2:236106/140‑1 (MQ=255)
                                                                                gcggcgGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCa                                                        >  1:1084148/1‑131 (MQ=255)
                                                                                gcggcgGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCa                                                        <  2:1084148/131‑1 (MQ=255)
                                                                                gcggcgGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATg                                               >  1:8580/1‑140 (MQ=255)
                                                                                 cggcggACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGc                                              <  2:122534/140‑1 (MQ=255)
                                                                                 cggcggACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGc                                              <  1:1108894/140‑1 (MQ=255)
                                                                                  ggcggACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCAtacc                                             <  1:536636/140‑4 (MQ=255)
                                                                                  ggcggACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGcc                                             <  1:961303/140‑1 (MQ=255)
                                                                                       aCAGCCTCACTTCCCAGGCGCTGGTGGGCCTGAATAACGGCGCTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCcaacaa                                        <  1:951894/140‑1 (MQ=255)
                                                                                          gCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATac                                     >  1:962566/1‑140 (MQ=255)
                                                                                          gCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATac                                     >  1:142486/1‑140 (MQ=255)
                                                                                          gCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCC‑ACAATaca                                    >  1:116187/1‑140 (MQ=255)
                                                                                            cTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATacac                                   <  2:426655/140‑1 (MQ=255)
                                                                                              cACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCa                                 >  1:124750/1‑140 (MQ=255)
                                                                                              cACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGCCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCa                                 <  2:897644/140‑1 (MQ=255)
                                                                                                   cccAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACca                            >  1:123039/1‑140 (MQ=255)
                                                                                                     cAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATacac                                   <  2:214729/131‑1 (MQ=255)
                                                                                                     cAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATacac                                   >  1:214729/1‑131 (MQ=255)
                                                                                                     cAGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACcata                          >  2:31986/1‑139 (MQ=255)
                                                                                                      aGGCGCTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACcatca                         >  2:96090/1‑140 (MQ=255)
                                                                                                          gcTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTc                     <  1:1073509/140‑1 (MQ=255)
                                                                                                           cTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTc                     <  2:1008095/139‑1 (MQ=255)
                                                                                                           cTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTc                     >  1:1008095/1‑139 (MQ=255)
                                                                                                           cTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCg                    >  2:585006/1‑140 (MQ=255)
                                                                                                           cTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCg                    >  2:656375/1‑140 (MQ=255)
                                                                                                           cTGGCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCg                    >  1:880577/1‑140 (MQ=255)
                                                                                                              gCGGGCCTGAATAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAgg                 <  2:67881/140‑1 (MQ=255)
                                                                                                                       aaTAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAGGGGAAGACgg        <  1:829805/140‑1 (MQ=255)
                                                                                                                        aTAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAGGGGAAGACGgc       >  2:320842/1‑140 (MQ=255)
                                                                                                                        aTAACGGCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAGGGGAAGACGgc       >  1:664608/1‑140 (MQ=255)
                                                                                                                             ggCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAGGGGAAGACGGCGCTTg  <  2:174383/140‑1 (MQ=255)
                                                                                                                              gCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAGGGGAAGa           >  1:941745/1‑130 (MQ=255)
                                                                                                                              gCACTGGGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAGGGGAAGa           <  2:941745/130‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                     
TCGATGGCCAGCAGGGTCAGGCCGCACCAGTGCGGATGCGGCGTGGCGTTATGCCAGAGCTGCGCTGTTTTCGTGAACACGCGGCGGACAGCCTCACTTCCCAGGCGCTGGCGGGCCTGAATAACGGCACT‑GGGGGCAACGAAGGGGCGATTGCCCGGCAGCATGATGTCCAGGCGATTCACAATCTGGTGAAGAGGTTCTTTACGCTCAAGCGCCATGCCAACAATACACCAGACCATCATTTCGAGGGGAAGACGGCGCTTG  >  NC_000913/4503034‑4503297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A