Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,505,662 Δ1 bp coding (376/1119 nt) yjhC → KpLE2 phage‑like element; putative oxidoreductase YjhC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,505,6590G.99.2% 515.9 / ‑2.7 120coding (373/1119 nt)yjhCKpLE2 phage‑like element; putative oxidoreductase YjhC
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base . (65/54);  total (65/55)
Fisher's exact test for biased strand distribution p-value = 4.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 130 total aligned reads displayed.

AAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATGGGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCTGGTGGAC  >  NC_000913/4505521‑4505794
                                                                                                                                          |                                                                                                                                       
aaaGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATgg                                                                                                                                        <  2:1039083/140‑1 (MQ=255)
  agcagcAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATgggt                                                                                                                                      <  2:760187/140‑2 (MQ=255)
    cagcaAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATgggttc                                                                                                                                    <  2:1296077/140‑4 (MQ=255)
    cagcaAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATggg                                                                                                                                       >  1:262286/1‑137 (MQ=255)
    cagcaAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATggg                                                                                                                                       <  2:262286/137‑1 (MQ=255)
     agcaAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATgggttca                                                                                                                                   <  2:563264/140‑5 (MQ=255)
     agcaAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATgggttca                                                                                                                                   <  1:1521965/140‑5 (MQ=255)
     agcaAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATggg                                                                                                                                       <  1:1424465/136‑1 (MQ=255)
       caAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAat                                                                                                                                >  2:504662/1‑140 (MQ=255)
       caAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAat                                                                                                                                <  1:937559/140‑1 (MQ=255)
        aaaGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAata                                                                                                                               >  2:577895/1‑140 (MQ=255)
            aaTAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTCTCAAT‑GGGTTCAat                                                                                                                                <  2:153138/135‑1 (MQ=255)
             aTAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCAc                                                                                                                          <  1:1187117/140‑1 (MQ=255)
                 gaagCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGaa                                                                                                                      <  1:83952/140‑1 (MQ=255)
                 gaagCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGaa                                                                                                                      >  1:108077/1‑140 (MQ=255)
                 gaagCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGaa                                                                                                                      >  2:1135579/1‑140 (MQ=255)
                 gaagCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGaa                                                                                                                      <  1:1451761/140‑1 (MQ=255)
                  aagCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAg                                                                                                                     <  1:1028134/140‑1 (MQ=255)
                     cATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGtta                                                                                                                  <  2:1613080/140‑1 (MQ=255)
                      aTGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTTGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaa                                                                                                                 >  2:1398913/1‑140 (MQ=255)
                      aTGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaa                                                                                                                 >  2:1431086/1‑140 (MQ=255)
                      aTGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaa                                                                                                                 >  2:646702/1‑140 (MQ=255)
                      aTGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaa                                                                                                                 >  1:609234/1‑140 (MQ=255)
                      aTGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaa                                                                                                                 >  2:975651/1‑140 (MQ=255)
                      aTGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaa                                                                                                                 >  1:1699546/1‑140 (MQ=255)
                       tGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaat                                                                                                                >  1:1253137/1‑140 (MQ=255)
                       tGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaat                                                                                                                >  1:98253/1‑140 (MQ=255)
                       tGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGttaat                                                                                                                <  1:1594619/140‑1 (MQ=255)
                             ttGTGAAAACCAATTTGCATTAAGTTATGAAGATTTTTTGGATATGGTAAAAGCTGTTAAAGAAGTGGGTGTGCCCTTAATGGCC‑GGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAaagaa                                                                                                         <  2:244316/140‑1 (MQ=255)
                                tgAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAgg                                                                                                       >  2:124624/1‑140 (MQ=255)
                                      aCCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTAt                                                                                                 <  1:861675/140‑1 (MQ=255)
                                         aaTTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCgg                                                                                              <  2:483787/140‑1 (MQ=255)
                                           ttGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCg                                                                                            <  2:318569/140‑1 (MQ=255)
                                           ttGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCg                                                                                            <  2:1699546/140‑1 (MQ=255)
                                           ttGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCg                                                                                            >  2:643541/1‑140 (MQ=255)
                                           ttGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCg                                                                                            <  2:714218/140‑1 (MQ=255)
                                             gCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGaa                                                                                          <  2:189432/140‑1 (MQ=255)
                                                ttAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCgg                                                                                              <  2:413572/133‑1 (MQ=255)
                                                ttAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCgg                                                                                              >  1:413572/1‑133 (MQ=255)
                                                  aaGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAAtatt                                                                                     >  2:1663007/1‑140 (MQ=255)
                                                   aGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAAtatta                                                                                    >  2:1352315/1‑140 (MQ=255)
                                                     ttATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATc                                                                                  <  1:307494/140‑1 (MQ=255)
                                                     ttATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATc                                                                                  <  1:1663007/140‑1 (MQ=255)
                                                     ttATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATc                                                                                  <  2:830564/140‑1 (MQ=255)
                                                     ttATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATc                                                                                  <  1:646702/140‑1 (MQ=255)
                                                     ttATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATc                                                                                  <  1:975651/140‑1 (MQ=255)
                                                     ttATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATc                                                                                  <  1:504662/140‑1 (MQ=255)
                                                        tGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATg                                                                               >  2:894478/1‑140 (MQ=255)
                                                               tgtgtgGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACt                                                                        <  2:114673/140‑1 (MQ=255)
                                                                           gTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGc                                                            >  1:1230577/1‑140 (MQ=255)
                                                                           gTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGc                                                            >  1:429721/1‑140 (MQ=255)
                                                                           gTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGc                                                            >  1:1308529/1‑140 (MQ=255)
                                                                             cAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTg                                                          >  2:1037675/1‑140 (MQ=255)
                                                                               aaGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAagag                                                                   >  1:907334/1‑129 (MQ=255)
                                                                                aGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGa                                                       >  2:508774/1‑140 (MQ=255)
                                                                                aGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGa                                                       >  1:239135/1‑140 (MQ=255)
                                                                                aGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGa                                                       >  2:1275635/1‑140 (MQ=255)
                                                                                  cGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGaaa                                                     <  1:1037675/140‑1 (MQ=255)
                                                                                      tAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAaaacaa                                                 >  1:751859/1‑140 (MQ=255)
                                                                                              cTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAagaga                                         >  1:867363/1‑140 (MQ=255)
                                                                                              cTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAagaga                                         >  2:1082311/1‑140 (MQ=255)
                                                                                              cTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAagaga                                         >  2:206470/1‑140 (MQ=255)
                                                                                                ggTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAgagaga                                       <  1:1135579/140‑1 (MQ=255)
                                                                                                ggTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAgagaga                                       >  1:1463596/1‑140 (MQ=255)
                                                                                                  tgtgACCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACt                                     >  1:1580206/1‑140 (MQ=255)
                                                                                                      aCCTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTcc                                 >  1:960828/1‑140 (MQ=255)
                                                                                                       ccTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCt                                >  1:671099/1‑140 (MQ=255)
                                                                                                       ccTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCt                                >  1:1296958/1‑140 (MQ=255)
                                                                                                        cTTTATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTg                               >  1:391434/1‑140 (MQ=255)
                                                                                                         tttATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTgg                              <  1:508774/140‑1 (MQ=255)
                                                                                                           tATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTgg                              <  2:742072/138‑1 (MQ=255)
                                                                                                           tATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTgg                              >  1:742072/1‑138 (MQ=255)
                                                                                                           tATGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGaa                            >  1:569361/1‑140 (MQ=255)
                                                                                                            aTGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGaaa                           >  1:883295/1‑140 (MQ=255)
                                                                                                            aTGGCCGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGaaa                           >  2:1373186/1‑140 (MQ=255)
                                                                                                                ccGGGCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGa                       <  1:1373186/140‑1 (MQ=255)
                                                                                                                  gggCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATg                     >  2:1400631/1‑140 (MQ=255)
                                                                                                                  gggCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATg                     >  1:505387/1‑140 (MQ=255)
                                                                                                                   ggCATATTATGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGa                    <  2:1081404/140‑1 (MQ=255)
                                                                                                                        attatGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGaa               <  1:1102513/140‑1 (MQ=255)
                                                                                                                        attatGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGaa               >  2:126446/1‑140 (MQ=255)
                                                                                                                          tatGAATTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACa             <  1:1005779/140‑1 (MQ=255)
                                                                                                                              aaTTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATc          >  2:1404892/1‑139 (MQ=255)
                                                                                                                              aaTTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATc          <  1:1404892/139‑1 (MQ=255)
                                                                                                                              aaTTTTTTCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCt         >  2:296396/1‑140 (MQ=255)
                                                                                                                                  ttttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtg     <  2:960828/140‑1 (MQ=255)
                                                                                                                                  ttttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtg     <  2:883295/140‑1 (MQ=255)
                                                                                                                                  ttttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtg     <  2:868132/140‑1 (MQ=255)
                                                                                                                                  ttttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtg     <  2:671099/140‑1 (MQ=255)
                                                                                                                                  ttttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtg     <  2:1296958/140‑1 (MQ=255)
                                                                                                                                  ttttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtg     <  2:1253137/140‑1 (MQ=255)
                                                                                                                                   tttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtgg    <  1:721120/140‑1 (MQ=255)
                                                                                                                                   tttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtgg    <  1:863163/140‑1 (MQ=255)
                                                                                                                                   tttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtgg    >  2:1190053/1‑140 (MQ=255)
                                                                                                                                   tttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtgg    >  2:1337172/1‑140 (MQ=255)
                                                                                                                                   tttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtg     <  2:1303149/139‑1 (MQ=255)
                                                                                                                                   tttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCtggtg     >  1:1303149/1‑139 (MQ=255)
                                                                                                                                    ttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCTGGTGGa   <  1:1337172/140‑1 (MQ=255)
                                                                                                                                    ttCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCTGGTGGa   <  2:963370/140‑1 (MQ=255)
                                                                                                                                     tCAAT‑GGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCTGGTGGAc  <  1:1082311/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                       
AAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATGGGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTAAGAGAAATGGCTGGGAAAACAAACAAGAGAGACTTTCCTGGAAAAAGATGAAAGAACAATCTGGTGGAC  >  NC_000913/4505521‑4505794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A