Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,583,658 A→G L1035P (CTC→CCC)  hsdR ← type I restriction enzyme EcoKI endonuclease component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,583,6580AG100.0% 281.3 / NA 79L1035P (CTC→CCC) hsdRtype I restriction enzyme EcoKI endonuclease component
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (37/42);  total (37/42)

AGCGCGGCGAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGAGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTCACCACTTC  >  NC_000913/4583522‑4583794
                                                                                                                                        |                                                                                                                                        
aGCGCGGCGAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCAACCAGCCCTTTACGGGTGGGAt                                                                                                                                       >  2:1128138/1‑140 (MQ=255)
  cgcgGCGAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATcg                                                                                                                                     >  1:648055/1‑140 (MQ=255)
  cgcgGCGAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATcg                                                                                                                                     >  1:742259/1‑140 (MQ=255)
    cggcgAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATcgcg                                                                                                                                   <  2:594996/140‑1 (MQ=255)
       cgAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTTGCTCGACCAGCCCTTTACGGGTGGGATCGCGCgg                                                                                                                                >  2:787920/1‑140 (MQ=255)
        gAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCggg                                                                                                                               <  1:179392/140‑1 (MQ=255)
        gAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCggg                                                                                                                               <  2:159973/140‑1 (MQ=255)
        gAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCggg                                                                                                                               <  2:183949/140‑1 (MQ=255)
        gAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCggg                                                                                                                               <  1:1229946/140‑1 (MQ=255)
          atatGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCg                                                                                                                             <  1:767289/140‑1 (MQ=255)
          atatGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCg                                                                                                                             <  1:1246082/140‑1 (MQ=255)
               aCCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATtaa                                                                                                                        <  2:1155125/140‑1 (MQ=255)
                 cAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATtaata                                                                                                                      <  2:821270/140‑1 (MQ=255)
                 cAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATtaata                                                                                                                      <  2:1318307/140‑1 (MQ=255)
                   aTCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAGGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAAc                                                                                                                    >  1:553020/1‑140 (MQ=255)
                   aTCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAAc                                                                                                                    >  1:897373/1‑140 (MQ=255)
                   aTCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCACGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAAc                                                                                                                    >  2:1113662/1‑140 (MQ=255)
                                  atatCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCgg                                                                                                     >  2:63274/1‑140 (MQ=255)
                                       ttCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTgcg                                                                                                <  2:648055/140‑1 (MQ=255)
                                             gcgcGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCGCAAAGTGCTGGCGGTCCAACCAAACCTATATCCCGGCCAACCCCTTACGGGGGGGATCGCGCGGGGAATTAATTAACGCCTGCAAAGCCGGTGGCGCGttgg                                                                                          >  2:360513/1‑138 (MQ=255)
                                              cgcgTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTc                                                                                           <  1:805244/138‑1 (MQ=255)
                                              cgcgTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTc                                                                                           >  2:805244/1‑138 (MQ=255)
                                              cgcgTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCgg                                                                                         >  2:383536/1‑140 (MQ=255)
                                               gcgTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCggg                                                                                        <  2:940364/140‑1 (MQ=255)
                                                cgTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCgggg                                                                                       >  1:483229/1‑140 (MQ=255)
                                                   ctctTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAAc                                                                                    >  2:461801/1‑140 (MQ=255)
                                                    tctTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACg                                                                                   <  1:461801/140‑1 (MQ=255)
                                                       ttCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTg                                                                                <  1:787920/140‑1 (MQ=255)
                                                       ttCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTg                                                                                <  1:1408491/140‑1 (MQ=255)
                                                             gCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAg                                                                          >  2:241873/1‑140 (MQ=255)
                                                             gCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAg                                                                          <  2:742259/140‑1 (MQ=255)
                                                              cTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGc                                                                         <  1:1034074/140‑1 (MQ=255)
                                                                ttGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGa                                                                       >  1:308097/1‑140 (MQ=255)
                                                                ttGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGa                                                                       <  2:1175033/140‑1 (MQ=255)
                                                                ttGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGa                                                                       >  1:742218/1‑140 (MQ=255)
                                                                ttGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGa                                                                       >  1:1299900/1‑140 (MQ=255)
                                                                 tGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAg                                                                      >  1:1288115/1‑140 (MQ=255)
                                                                 tGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAg                                                                      >  1:145775/1‑140 (MQ=255)
                                                                  gcgcAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGt                                                                     >  1:1032656/1‑140 (MQ=255)
                                                                  gcgcAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGt                                                                     >  1:978284/1‑140 (MQ=255)
                                                                   cgcAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTc                                                                    >  2:1353148/1‑140 (MQ=255)
                                                                        ggAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAgg                                                               >  1:1008871/1‑140 (MQ=255)
                                                                        ggAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAgg                                                               >  1:1195061/1‑140 (MQ=255)
                                                                        ggAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAgg                                                               >  1:804690/1‑140 (MQ=255)
                                                                        ggAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAgg                                                               >  2:195146/1‑140 (MQ=255)
                                                                        ggAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAgg                                                               >  1:514746/1‑140 (MQ=255)
                                                                                  tCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGaa                                                     >  2:36685/1‑140 (MQ=255)
                                                                                        tGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTg                                               >  1:279359/1‑140 (MQ=255)
                                                                                         gCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgc                                              >  1:1058953/1‑140 (MQ=255)
                                                                                          cTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcg                                             <  1:1113662/140‑1 (MQ=255)
                                                                                          cTGGCGGTCAAACCACTCCTGTAGCTCAACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcg                                             <  1:1128138/140‑1 (MQ=255)
                                                                                           tGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcgg                                            >  1:1016923/1‑140 (MQ=255)
                                                                                           tGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcgg                                            >  2:1182255/1‑140 (MQ=255)
                                                                                           tGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcgg                                            >  1:780510/1‑140 (MQ=255)
                                                                                            ggCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcggc                                           <  2:1288115/140‑1 (MQ=255)
                                                                                            ggCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcggc                                           <  2:804690/140‑1 (MQ=255)
                                                                                            ggCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcggc                                           <  1:137182/140‑1 (MQ=255)
                                                                                            ggCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTgcggc                                           <  1:183775/140‑1 (MQ=255)
                                                                                              cGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCgt                                         <  2:1008871/140‑1 (MQ=255)
                                                                                                 tCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTc                                      <  2:1123057/140‑1 (MQ=255)
                                                                                                   aaaCCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGt                                    <  1:1353148/140‑1 (MQ=255)
                                                                                                    aaCCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTa                                   >  2:1206834/1‑140 (MQ=255)
                                                                                                        aCTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCa                               <  2:1195061/140‑1 (MQ=255)
                                                                                                        aCTCCTGTAGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCa                               <  2:279359/140‑1 (MQ=255)
                                                                                                                aGCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAg                       <  1:36685/140‑1 (MQ=255)
                                                                                                                 gCTCGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGc                      >  1:1359272/1‑140 (MQ=255)
                                                                                                                    cGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAAt                                 >  1:353613/1‑126 (MQ=255)
                                                                                                                    cGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAAt                                 <  2:353613/126‑1 (MQ=255)
                                                                                                                    cGACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCA‑CAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGAtt                  >  1:323019/1‑140 (MQ=255)
                                                                                                                     gACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGAtt                  <  1:383536/140‑1 (MQ=255)
                                                                                                                     gACCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGAtt                  <  2:154471/140‑1 (MQ=255)
                                                                                                                      aCCAGCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGAttt                 >  2:231943/1‑140 (MQ=255)
                                                                                                                          gCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTaca             <  1:360513/140‑1 (MQ=255)
                                                                                                                          gCCCTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTaca             <  1:1406922/140‑1 (MQ=255)
                                                                                                                            ccTTTACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACt           <  2:514746/140‑1 (MQ=255)
                                                                                                                              tttACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTca         <  2:553020/140‑1 (MQ=255)
                                                                                                                               ttACGGGTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTcac        <  1:481427/140‑1 (MQ=255)
                                                                                                                                   gggTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTCACCACt    <  2:1299900/140‑1 (MQ=255)
                                                                                                                                     gTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTCACCACTTc  >  2:999733/1‑140 (MQ=255)
                                                                                                                                     gTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTCACCACTTc  >  1:129438/1‑140 (MQ=255)
                                                                                                                                     gTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTCACCACTTc  <  2:1359272/140‑1 (MQ=255)
                                                                                                                                     gTGGGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTCACCACTTc  <  1:241873/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
AGCGCGGCGAATATGACCAATCAGCCGGGCGGCGATATCTTCATTGCGCGTCTCTTTCCATGCTTTGCGCAGGGAAGATTCCTCAAAGTGCTGGCGGTCAAACCACTCCTGTAGCTCGACCAGCCCTTTACGGGTGAGATCGCGCGGGCGATTAATAACTGCCTGCAATGCCGGTTGCGCGTTCGGGGAACGTTGCACCAGCGAGTCAAAGGCTTCGAGGAAATCCTGCGGCGTGTCGTAATCACCGTACAGCGATTTTACACTCACCACTTC  >  NC_000913/4583522‑4583794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A