Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,583,950 T→G N938H (AAC→CAC)  hsdR ← type I restriction enzyme EcoKI endonuclease component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,583,9500TG98.6% 238.3 / NA 72N938H (AAC→CAC) hsdRtype I restriction enzyme EcoKI endonuclease component
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base G (30/41);  minor base A (0/1);  total (30/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCGGCGCATCATTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTTCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAGTTGTTCATGGCTGTG  >  NC_000913/4583814‑4584082
                                                                                                                                        |                                                                                                                                    
aTCGGCGCATCATTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCAc                                                                                                                                   >  1:1137914/1‑140 (MQ=255)
 tCGGCGCATCATTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCAcg                                                                                                                                  >  2:502059/1‑140 (MQ=255)
      gcATCATTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCAcgcccgc                                                                                                                             >  1:1200534/1‑140 (MQ=255)
       catcatTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCAcgcccgcc                                                                                                                            <  2:1152606/140‑1 (MQ=255)
       catcatTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCAcgcccgcc                                                                                                                            <  2:1081799/140‑1 (MQ=255)
       catcatTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCAcgcccgcc                                                                                                                            >  2:732768/1‑140 (MQ=255)
       catcatTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCAcgcccgcc                                                                                                                            <  1:119043/140‑1 (MQ=255)
        atcatTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCccgccg                                                                                                                           <  1:94059/140‑1 (MQ=255)
        atcatTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCCCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCccgccg                                                                                                                           <  2:908797/140‑1 (MQ=255)
         tcatTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCcgccgc                                                                                                                          >  1:462086/1‑140 (MQ=255)
            ttCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTc                                                                                                                       <  2:1038605/140‑1 (MQ=255)
             tCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTcc                                                                                                                      <  1:190402/140‑1 (MQ=255)
                 gttgttGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGc                                                                                                                  <  1:586087/140‑1 (MQ=255)
                   tgttgATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCAt                                                                                                                >  1:234230/1‑140 (MQ=255)
                    gttgATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGc                                                                                                                  >  1:1108345/1‑137 (MQ=255)
                    gttgATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATa                                                                                                               >  1:402143/1‑140 (MQ=255)
                    gttgATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATa                                                                                                               >  1:955715/1‑140 (MQ=255)
                    gttgATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATa                                                                                                               >  1:915778/1‑140 (MQ=255)
                    gttgATGTCCGTTTTCAGCTTTTCCAGACCGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGc                                                                                                                  <  2:1108345/137‑1 (MQ=255)
                      tgATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGc                                                                                                             >  2:88184/1‑140 (MQ=255)
                       gATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCt                                                                                                            >  2:680428/1‑140 (MQ=255)
                           tCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATc                                                                                                        >  2:1098942/1‑140 (MQ=255)
                             cGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCa                                                                                                      <  2:352260/140‑1 (MQ=255)
                             cGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCa                                                                                                      <  2:263075/140‑1 (MQ=255)
                               ttttCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAga                                                                                                    <  1:257462/140‑1 (MQ=255)
                                 ttCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAgacg                                                                                                  <  2:234230/140‑1 (MQ=255)
                                     gCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGc                                                                                              <  2:955715/140‑1 (MQ=255)
                                       ttttCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCAc                                                                                            <  2:402143/140‑1 (MQ=255)
                                        tttCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCAcc                                                                                           <  2:271899/140‑1 (MQ=255)
                                        tttCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCAcc                                                                                           <  2:462086/140‑1 (MQ=255)
                                        tttCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCAcc                                                                                           <  2:446202/140‑1 (MQ=255)
                                        tttCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAACCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCAcc                                                                                           <  1:739412/140‑1 (MQ=255)
                                                   gCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCGTGGCATAGCTCATCCAGACGACGCACCTGTTtatctat                                                                                >  1:624499/1‑140 (MQ=255)
                                                   gCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTtatctat                                                                                >  1:792520/1‑140 (MQ=255)
                                                    cGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTtatctatc                                                                               >  2:750102/1‑140 (MQ=255)
                                                     gATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCg                                                                              <  2:1178197/140‑1 (MQ=255)
                                                             cAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTg                                                                      >  1:879432/1‑140 (MQ=255)
                                                                  ggTTTGTTAAAGCTTTGGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCGTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTc                                                                 <  2:624499/139‑1 (MQ=255)
                                                                  aGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTc                                                                 <  1:750102/140‑1 (MQ=255)
                                                                       gTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGt                                                            <  1:732768/140‑1 (MQ=255)
                                                                           aaGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTaaa                                                        <  1:680428/140‑1 (MQ=255)
                                                                           aaGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTaaa                                                        <  1:502059/140‑1 (MQ=255)
                                                                              aCTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGt                                                     >  2:141127/1‑140 (MQ=255)
                                                                              aCTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCATTTCGCTGCGGTCACGGTTAAACGt                                                     >  2:1188345/1‑140 (MQ=255)
                                                                                ttCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTgg                                                   >  1:938727/1‑140 (MQ=255)
                                                                                ttCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTgg                                                   >  2:456784/1‑140 (MQ=255)
                                                                                 tCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTACACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGc                                                  <  2:792520/140‑1 (MQ=255)
                                                                                  cGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGcc                                                 <  2:879432/140‑1 (MQ=255)
                                                                                  cGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGcc                                                 >  2:809148/1‑140 (MQ=255)
                                                                                  cGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGcc                                                 >  1:523435/1‑140 (MQ=255)
                                                                                  cGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGcc                                                 >  1:158802/1‑140 (MQ=255)
                                                                                     cgcTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGa                                              <  1:141127/140‑1 (MQ=255)
                                                                                         ccAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCga                                          <  1:809148/140‑1 (MQ=255)
                                                                                               cGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATAc                                    >  2:200326/1‑140 (MQ=255)
                                                                                                 gCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGc                                  >  2:628568/1‑140 (MQ=255)
                                                                                                  cccTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCt                                 >  1:507020/1‑140 (MQ=255)
                                                                                                     tttttCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGAc                                             <  2:395643/125‑1 (MQ=255)
                                                                                                     tttttCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGAc                                             >  1:395643/1‑125 (MQ=255)
                                                                                                       tttCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGc                            <  2:523435/140‑1 (MQ=255)
                                                                                                          cccGCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTc                         <  2:441819/140‑1 (MQ=255)
                                                                                                             gCAGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGcc                      <  2:796706/140‑1 (MQ=255)
                                                                                                               aGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGccac                    <  2:158802/140‑1 (MQ=255)
                                                                                                               aGGCGCGAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCATTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGccac                    <  1:1188345/140‑1 (MQ=255)
                                                                                                                  cgcgAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAg                 <  1:200326/140‑1 (MQ=255)
                                                                                                                  cgcgAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAg                 <  2:472021/140‑1 (MQ=255)
                                                                                                                  cgcgAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAg                 >  2:279509/1‑140 (MQ=255)
                                                                                                                  cgcgAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAg                 <  2:915778/140‑1 (MQ=255)
                                                                                                                  cgcgAGGCGAAGCCGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAg                 <  2:1137914/140‑1 (MQ=255)
                                                                                                                               cGTTAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAGTTGTTCATGGCtg    <  1:279509/140‑1 (MQ=255)
                                                                                                                                 ttAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAGTTGTTCATGGCtgtg  >  1:540842/1‑140 (MQ=255)
                                                                                                                                 ttAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAGTTGTTCATGGCtgtg  <  1:277244/140‑1 (MQ=255)
                                                                                                                                 ttAAAGTGCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAGTTGTTCATGGCtgtg  <  1:628568/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
ATCGGCGCATCATTCAGGTTGTTGATGTCCGTTTTCAGCTTTTCCAGACGGGCGATAAAGCCAGGCAGTTTGTTAAAGACTTCGGCGCTCCAGTGCGGCCCTTTTTCCCGCAGGCGCGAGGCGAAGCCGTTAAAGTTCACGCCCGCCGCGTCCTGGCATAGCTCATCCAGACGACGCACCTGTTTATCTATCGTTTCGCTGCGGTCACGGTTAAACGTGGCCAGACCGATGATACGCTGGAGCTTCGCCACCAGTTGTTCATGGCTGTG  >  NC_000913/4583814‑4584082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A