Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	163	52.9	1786516	99.3%	1774010	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,416,316	C→T	P524S (CCG→TCG)	pta →	phosphate acetyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,416,316	0	C	T	98.4%	210.7 / ‑4.3	62	P524S (CCG→TCG)	pta	phosphate acetyltransferase
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (33/28); total (33/29)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.39e-01

AAGGCATGACCGAAACCGTTGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGCCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGACCGCTGAACAGCTGGCAGA  >  NC_000913/2416182‑2416449

aaGGCATGACCGAAACCGTTGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTg                                                                                                                                  >  2:198063/1‑140 (MQ=255)

 aGGCATGACCGAAACCGTTGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGc                                                                                                                                 >  2:675105/1‑140 (MQ=255)

       gACCGAAACCGTTGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGa                                                                                                                           >  2:180167/1‑140 (MQ=255)

       gACCGAAACCGTTGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGa                                                                                                                           >  2:484645/1‑140 (MQ=255)

        aCCGAAACCGTTGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGCCGCTGCAGCTGAt                                                                                                                          <  1:705581/140‑1 (MQ=255)

             aaCCGTTGGCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCaaaa                                                                                                                     <  2:506017/140‑1 (MQ=255)

                  ttGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCa                                                                                                                <  1:348936/140‑1 (MQ=255)

                  ttGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCa                                                                                                                >  2:589064/1‑140 (MQ=255)

                  ttGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCa                                                                                                                >  2:348936/1‑140 (MQ=255)

                  ttGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCACTGCAGCTGATCAAAACTGCa                                                                                                                >  1:128882/1‑140 (MQ=255)

                         cgAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCa                                                                                                         <  1:484645/140‑1 (MQ=255)

                         cgAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCa                                                                                                         <  1:23778/140‑1 (MQ=255)

                          gAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAg                                                                                                        <  1:198063/140‑1 (MQ=255)

                          gAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAg                                                                                                        <  1:598155/140‑1 (MQ=255)

                          gAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCACTGCAGCTGATCAAAACTGCACCGGGCAg                                                                                                        <  2:128882/140‑1 (MQ=255)

                            aCAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCt                                                                                                      <  1:174126/140‑1 (MQ=255)

                            aCAGCTGGAAGACAACGTGGCGCTCGGCACGCTGATGCTGGAACAGGATGTAGTTGAGGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGTTCACAACTGCACCGCGCAGCt                                                                                                      >  2:693842/1‑140 (MQ=255)

                              aGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTcc                                                                                                    <  2:557208/140‑1 (MQ=255)

                                  ggAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTgg                                                                                                <  1:521794/140‑1 (MQ=255)

                                        cAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCa                                                                                                         <  1:536830/125‑1 (MQ=255)

                                        cAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCa                                                                                                         >  2:536830/1‑125 (MQ=255)

                                        cAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCtt                                                                                          <  2:316285/140‑1 (MQ=255)

                                        cAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCtt                                                                                          >  1:173468/1‑140 (MQ=255)

                                        cAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCtt                                                                                          >  2:634907/1‑140 (MQ=255)

                                          aCGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTcc                                                                                        >  2:354977/1‑140 (MQ=255)

                                            gtggtgCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCgt                                                                                      <  1:354977/140‑1 (MQ=255)

                                                tgCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGttc                                                                                  >  1:573236/1‑140 (MQ=255)

                                                  cTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGttctt                                                                                >  2:351639/1‑140 (MQ=255)

                                                     ggTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGGAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCAt                                                                             >  2:610193/1‑140 (MQ=255)

                                                          gCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCAtgctgc                                                                        <  2:173468/140‑1 (MQ=255)

                                                          gCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGCCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTCCAtgctgc                                                                        >  1:348388/1‑140 (MQ=255)

                                                               tGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCg                                                                   >  2:747815/1‑140 (MQ=255)

                                                               tGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCg                                                                   >  1:776975/1‑140 (MQ=255)

                                                                 cTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGa                                                                 >  1:816740/1‑140 (MQ=255)

                                                                 cTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGa                                                                 <  1:610193/140‑1 (MQ=255)

                                                                 cTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGa                                                                 <  2:573236/140‑1 (MQ=255)

                                                                        aGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGgtt                                                          <  1:351639/140‑1 (MQ=255)

                                                                          gATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTGTTCATGCTGCTGCCGGAACAGgttta                                                        >  2:790937/1‑140 (MQ=255)

                                                                          gATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGgttta                                                        >  1:196697/1‑140 (MQ=255)

                                                                          gATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGgttta                                                        <  1:180167/140‑1 (MQ=255)

                                                                            tGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGgtttacg                                                      <  2:508233/140‑1 (MQ=255)

                                                                            tGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGgtttacg                                                      <  1:747815/140‑1 (MQ=255)

                                                                            tGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACT‑CCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGgtttacgt                                                     >  1:564229/1‑140 (MQ=255)

                                                                               aGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGgtttacgttt                                                   >  2:762025/1‑140 (MQ=255)

                                                                                    aTGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGt                                              >  2:586084/1‑140 (MQ=255)

                                                                                    aTGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGt                                              >  2:215050/1‑140 (MQ=255)

                                                                                    aTGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGt                                              >  1:402662/1‑140 (MQ=255)

                                                                                         cTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACtg                                         <  2:537086/140‑1 (MQ=255)

                                                                                              ttCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGa                                    >  2:728359/1‑140 (MQ=255)

                                                                                               tCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGAt                                   <  2:728808/140‑1 (MQ=255)

                                                                                               tCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGAt                                   >  2:580309/1‑140 (MQ=255)

                                                                                                    tGCTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAAcc                              <  2:776975/140‑1 (MQ=255)

                                                                                                      cTGTTCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCg                            >  1:860997/1‑140 (MQ=255)

                                                                                                         ttCACACTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGAt                         >  2:325581/1‑140 (MQ=255)

                                                                                                           cacaCTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATcc                       <  1:728359/140‑1 (MQ=255)

                                                                                                             cacTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTCCATGCTGCTGTCGGAACAGGTTTACGTTCACGGTGACTGTGCGATCAACCCGGATCCGa                     <  2:348388/140‑1 (MQ=255)

                                                                                                              acTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGAc                    <  1:580309/140‑1 (MQ=255)

                                                                                                               cTACCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGAcc                   <  1:675105/140‑1 (MQ=255)

                                                                                                                 aCCGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGACCGc                 >  1:617721/1‑140 (MQ=255)

                                                                                                                   cGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGAc                    >  2:861750/1‑135 (MQ=255)

                                                                                                                   cGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGAc                    <  1:861750/135‑1 (MQ=255)

                                                                                                                   cGCAAACACCATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGACCGCTg               >  2:126037/1‑140 (MQ=255)

                                                                                                                            cATCCGTCCGTCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGACCGCTGAACAGCTgg      >  1:462997/1‑140 (MQ=255)

                                                                                                                               ccgtccgtCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGACCGCTGAACAGCTGGCAg   <  1:589064/140‑1 (MQ=255)

                                                                                                                                cgtccgtcGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGACCGCTGAACAGCTGGCAGa  <  2:462997/140‑1 (MQ=255)

                                                                                                                                cgtccgtcGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGACCGCTGAACAGCTGGCAGa  <  1:634907/140‑1 (MQ=255)

AAGGCATGACCGAAACCGTTGCCCGCGAACAGCTGGAAGACAACGTGGTGCTCGGTACGCTGATGCTGGAACAGGATGAAGTTGATGGTCTGGTTTCCGGTGCTGTTCACACTACCGCAAACACCATCCGTCCGCCGCTGCAGCTGATCAAAACTGCACCGGGCAGCTCCCTGGTATCTTCCGTGTTCTTCATGCTGCTGCCGGAACAGGTTTACGTTTACGGTGACTGTGCGATCAACCCGGATCCGACCGCTGAACAGCTGGCAGA  >  NC_000913/2416182‑2416449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A